Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307H01f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 105 3e-24
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 30 0.24
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 29 0.56
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos... 28 0.73
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 27 1.3
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 27 1.7
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 26 3.9
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 6.8
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 25 9.0
SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces pombe... 25 9.0
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 105 bits (253), Expect = 3e-24
Identities = 55/130 (42%), Positives = 74/130 (56%), Gaps = 1/130 (0%)
Frame = +1
Query: 34 FARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRL 213
F RYVE GRV LV G GKL +VD++D RAL+D P S PRQ IR + LT +
Sbjct: 4 FKRYVEVGRVVLVTKGEYTGKLAVIVDIVDHKRALIDSPCSEFPRQVIRYGSVVLTHIVM 63
Query: 214 KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFK-LTAARVKRNR 390
K A + +V K W + KW S WA+KL K+ R+Q+ D+DRF + + +R +
Sbjct: 64 KLPRGARSGIVAKKWKAQDVCNKWASSAWAKKLEAKKVRSQLNDFDRFAVMRLKKQRREQ 123
Query: 391 ARTAVFKSLK 420
AV K+LK
Sbjct: 124 VNVAVAKALK 133
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 40 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 126
+ ++PG+VAL+ G GK V ++ IDQ
Sbjct: 3 KILKPGKVALITRGRFAGKKVVILQAIDQ 31
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 40 RYVEPGRVALVADGPLKGKLVSVVDVIDQ 126
+ ++PG+VALV G GK V ++ +DQ
Sbjct: 3 KILKPGKVALVTRGRFAGKKVVILQNVDQ 31
>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 640
Score = 28.3 bits (60), Expect = 0.73
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 348 VICHLCALLFVR*LLGPLTFCPFFIEFSICPRF 250
V+C CAL +R P+ FCP ++F+ P+F
Sbjct: 508 VVCRTCALSRMRGR--PVGFCPLQLDFNNWPKF 538
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/49 (32%), Positives = 20/49 (40%)
Frame = -3
Query: 486 HFFRSRFRDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEPIVIC 340
HF F+ + G + S H LE+GS LN S I IC
Sbjct: 442 HFLTGNFKCAYSYLGFAIHSAHTLGLEHGSTDNSTLNEVSTEETSIRIC 490
>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1184
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +1
Query: 235 TRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKS 414
+ L +A + + E+ E++ +KLA +EKR + + K R+++ RA+ A K
Sbjct: 703 SELSERAAQERERKEQAKEAKRLKKLAKEEKRLKKKEEKARKAEEKRLQKERAKYA--KQ 760
Query: 415 LKVKAARA 438
+ ++A A
Sbjct: 761 MSRESAHA 768
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Frame = +1
Query: 52 PGRVALVADGPLKGKLVSVVDVIDQTRALVDGP--GSGVPRQQI 177
PG V ++ G +GK V V+ ++ T +V GP +GVP +++
Sbjct: 54 PGTVCILLAGRFRGKRVVVLSQLEDT-LVVTGPYKVNGVPIRRV 96
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.0 bits (52), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 137 WLMDPAVEYLGNRSA*TNSISQNSASNTRSQPLL 238
++ D AV Y N+ NS++ ++A N S PL+
Sbjct: 132 YMPDSAVAYNPNQDQFGNSVNVSAACNNVSAPLI 165
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 183 KPTPSHKIPPQIRVHSPYSSCE 248
KP P+ ++ PQ ++SP S E
Sbjct: 377 KPKPAKELSPQATLNSPIQSAE 398
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 24.6 bits (51), Expect = 9.0
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 158 PLPGPSTSARVWSITSTTLTNFPFKG 81
P+PG +T ++ S T N+P+ G
Sbjct: 51 PVPGTTTIYPTSNVASNTSENYPYTG 76
>SPAC22G7.09c |nup45||nucleoporin Nup45|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +1
Query: 364 TAARVKRNRARTAVFKSLKVKAARAGTFGKKNIP 465
T +NR T+ F + A AG FG+ P
Sbjct: 160 TGGLFDQNRPNTSTFGQFSTQPASAGLFGQSTQP 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,018,077
Number of Sequences: 5004
Number of extensions: 39955
Number of successful extensions: 103
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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