Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307H01f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical pr...   104   3e-23
U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like...    33   0.094
AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3 ...    33   0.094
Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical p...    32   0.22 
L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore nu...    28   3.5  
U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81461-2|CAB03835.1|  135|Caenorhabditis elegans Hypothetical
           protein C04F12.4 protein.
          Length = 135

 Score =  104 bits (250), Expect = 3e-23
 Identities = 55/131 (41%), Positives = 78/131 (59%)
 Frame = +1

Query: 28  MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKF 207
           M F R V+ GRV  +A G  +GKL ++V+VID  R  +DGP S V R    L  L LTKF
Sbjct: 1   MVFNRVVQIGRVVFIASGKDQGKLAAIVNVIDGNRVQIDGPSSDVTRTVRNLKDLQLTKF 60

Query: 208 RLKYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRN 387
            LK      T+ V+ A+  AK+ E + ++QWA+K+A +  RA++TD++R+KL  A+  RN
Sbjct: 61  VLKLRVGQRTKGVKAAFDAAKVTENFQKTQWAKKIAQRAIRAKLTDFERYKLMKAKQMRN 120

Query: 388 RARTAVFKSLK 420
           R        LK
Sbjct: 121 RIVRVELAKLK 131


>U41549-2|AAA83282.1|  208|Caenorhabditis elegans Histone h1 like
           protein 3 protein.
          Length = 208

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +1

Query: 202 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 375
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 376 VKRNRARTAVFKSLKVKAARAGTFGKKNIP 465
           VK+ ++   + K    K A++    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


>AF012253-1|AAB66471.1|  208|Caenorhabditis elegans histone H1.3
           protein.
          Length = 208

 Score = 33.5 bits (73), Expect = 0.094
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = +1

Query: 202 KFRL--KYAFTAPTRLVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAAR 375
           +FR+  K A  A   + +KA T     EK  +   AQK A  EK+A+ T   + K TA +
Sbjct: 108 RFRVTEKKAAAAKKPVAKKAAT----GEKKAKKPVAQKAATGEKKAKKTTATKTKKTADK 163

Query: 376 VKRNRARTAVFKSLKVKAARAGTFGKKNIP 465
           VK+ ++   + K    K A++    KK+ P
Sbjct: 164 VKKVKSPKKIAKPTAKKVAKSP--AKKSAP 191


>Z98866-16|CAB11565.2| 1159|Caenorhabditis elegans Hypothetical
           protein Y49E10.19 protein.
          Length = 1159

 Score = 32.3 bits (70), Expect = 0.22
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +1

Query: 289 ESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLKVKAAR 435
           E+QWA     ++ RA +T+YDR K    R+      T     L V  AR
Sbjct: 807 EAQWAMLRHVEKHRALLTEYDRLKRDGPRIIDGPRGTITVSQLSVNMAR 855


>L14745-16|AAA27916.2| 1010|Caenorhabditis elegans Kinetochore null
           protein 1 protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/38 (47%), Positives = 22/38 (57%)
 Frame = -3

Query: 465 RDIFLAEGTSTRSLHLQALEYGSPGTVPLNSCSC*LEP 352
           RDI LA  TS RS HL + +  +PGT  L S +  L P
Sbjct: 746 RDI-LAMNTSVRSPHLNSSKTAAPGTPSLMSQNVQLPP 782


>U00068-1|AAA50745.1|   85|Caenorhabditis elegans Hypothetical
           protein W04D12.1 protein.
          Length = 85

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 274 NEKWTESQWAQKLANKEKRAQMTDYDRFK 360
           N KW     A K+A KEK+ +M D ++ K
Sbjct: 43  NRKWKRIDSAVKVAKKEKKKKMKDEEKKK 71


>Z72512-6|CAD44143.2|  657|Caenorhabditis elegans Hypothetical
           protein R07B5.9 protein.
          Length = 657

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -1

Query: 149 GPSTSARV---WSITSTTLTNFPFKGPSATRATRPGS 48
           GPSTS+ V    S+ +TT    PF  P++ +   PGS
Sbjct: 374 GPSTSSHVTPQMSMINTTPQQPPFSHPNSQQQATPGS 410


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,451,658
Number of Sequences: 27780
Number of extensions: 240032
Number of successful extensions: 719
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)