Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G12f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 30 0.18
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 27 1.3
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|... 27 1.7
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 1.7
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha... 26 3.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 26 3.9
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 26 3.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 5.2
SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 6.8
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 25 9.0
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 25 9.0
SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces pombe... 25 9.0
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 30.3 bits (65), Expect = 0.18
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 363 RSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSNPAS 208
+ CC+S S C+ C S TSCCS CC + CCSN S
Sbjct: 244 KKSCCSSKKPS-CCSQEKKGCCSTE-KTSCCSQEKKSCCTSEKPSCCSNGKS 293
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Frame = -3
Query: 279 SCCSSSGILCCFAILCWCCSNPASGSLHS-PCSCC 178
SCCS CC + CCS G + SCC
Sbjct: 238 SCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCC 272
Score = 27.1 bits (57), Expect = 1.7
Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Frame = -3
Query: 360 SPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCS-NPASGSLHSPCS 184
S CC+ S S C C + SCCSS CC CCS S S
Sbjct: 223 SSCCSKKDSSPSEKPSC--CSQEK--KSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKS 278
Query: 183 CCIRCRLPIWSSTSST 136
CC + S+ ST
Sbjct: 279 CCTSEKPSCCSNGKST 294
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 27.5 bits (58), Expect = 1.3
Identities = 25/87 (28%), Positives = 37/87 (42%)
Frame = -3
Query: 396 SFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAILCWCCSN 217
S S+T S SP +S + S + + S+ +S SSS + S+
Sbjct: 131 SVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 190
Query: 216 PASGSLHSPCSCCIRCRLPIWSSTSST 136
+S S S S +PI SSTSS+
Sbjct: 191 SSSSSSSSSSSSSSSSSVPITSSTSSS 217
>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.7
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +2
Query: 68 FVERPCVLFQSIEQTLVQIHTGNVLEVLDHMGSRQRMQQEQGECREPLAGL 220
F+E+ +I+ ++ IH +V+EV ++RM Q GECR+ + L
Sbjct: 429 FIEQIEDEVDTIDSMILSIHYDHVMEVKP----QERMLQRVGECRKLIMSL 475
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 1.7
Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 6/88 (6%)
Frame = -3
Query: 375 LRSCRSPCCNSICCSYSCTLRCTFCYSN----RCGTSCCSSSGILCCFAILCWCCSNPAS 208
L C +P C + YS F ++ GTSC + + C + C+NP
Sbjct: 269 LGKCNNPNCRYVHIHYSENAPICFEFAKYGFCELGTSCKNQHILQCTDYAMFGSCNNPQC 328
Query: 207 GSLHSPCSCCI--RCRLPIWSSTSSTFP 130
H S + + PI + S P
Sbjct: 329 SLYHGAVSADVPEQTEAPISKTAGSINP 356
>SPCC1020.08 |||wybutosine biosynthesis protein
Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 688
Score = 26.2 bits (55), Expect = 3.0
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
Frame = -3
Query: 363 RSPCCNSICCSYSCTLRCTFCY---SNRCGTS 277
RS C S +C +CTFC+ +N GTS
Sbjct: 344 RSHLCMEATPSLACANKCTFCWRHGTNPVGTS 375
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.8 bits (54), Expect = 3.9
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = -3
Query: 351 CNSICCSYSCTLRCTFCYS---NRCGTSCCSSSGILCCFAILC 232
CNS + S T C CYS T CC S LC LC
Sbjct: 1240 CNSCNSTTSNTRICEKCYSLVPRMSCTFCCLSIHGLCIVCGLC 1282
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = -3
Query: 237 LCWCCSNPASGSLHSPCSCCIRCRLPI 157
LC C S P+ G H P C LPI
Sbjct: 297 LCACHSIPSRGGFHCPRCKAKVCTLPI 323
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.4 bits (53), Expect = 5.2
Identities = 12/15 (80%), Positives = 12/15 (80%)
Frame = -3
Query: 297 SNRCGTSCCSSSGIL 253
SNR GTS SSSGIL
Sbjct: 359 SNRSGTSSISSSGIL 373
>SPBC36B7.07 |tlg1||SNARE Tgl1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 225
Score = 25.0 bits (52), Expect = 6.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +2
Query: 212 AGLEQHQHSMAKQHRMPLLEQQEV 283
AGL + H++ +Q++ L +QQ+V
Sbjct: 118 AGLSEEDHAVNRQYQEQLYQQQDV 141
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 324 SYRSSKWSCNRGYGRSEGRCCYQRTQCPAGDINLCSVWRN 443
+YRS +W+ E CC C + +I +C V RN
Sbjct: 52 TYRS-RWAYVNDPQIGEINCCLNGWLCESNNILVCDVCRN 90
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 24.6 bits (51), Expect = 9.0
Identities = 6/12 (50%), Positives = 10/12 (83%)
Frame = -3
Query: 369 SCRSPCCNSICC 334
+CR+PCC+ + C
Sbjct: 292 ACRTPCCDKLFC 303
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/55 (20%), Positives = 22/55 (40%)
Frame = -3
Query: 408 QGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCF 244
+ +E+ G R P + + + C +R G CC+++ + CF
Sbjct: 415 KNLETASHDAGDLFWRMPFHEAYLKQLTSSSNADLCNVSRAGGGCCTAAAFIKCF 469
>SPBC16D10.06 |||ZIP zinc transporter 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 408
Score = 24.6 bits (51), Expect = 9.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +2
Query: 137 VLEVLDHMGSRQRMQQEQGECREPLAGLEQHQHS 238
+LEVL + R E G+ P G +QH HS
Sbjct: 155 LLEVLLNRYVEWRFGMEIGDHHGPTLGAKQHSHS 188
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,616,585
Number of Sequences: 5004
Number of extensions: 30962
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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