Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G12f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.36 
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     25   0.36 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   3.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   3.3  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   3.3  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 157 MVQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 47
           +VQ+  Y+P+  + + LFD       PF KD+ + +I
Sbjct: 327 VVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 363



 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 300 SKRCSVGCSYRSSKWSCNRGYGRSE 374
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 25.4 bits (53), Expect = 0.36
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 157 MVQHL*YVPRMDLHQRLFDRLKKNTRPFYKDLKQRLI 47
           +VQ+  Y+P+  + + LFD       PF KD+ + +I
Sbjct: 33  VVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 69


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -2

Query: 508 AAAPSGCSXAXXXIRSXLYLRTFLHTLHKLI 416
           A AP+GC      +R   YLR  +    +LI
Sbjct: 362 ALAPAGCDLTIDNLRKAKYLRACITESLRLI 392


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 252 CCFAILCWCCSN 217
           CC    CWCC N
Sbjct: 11  CC----CWCCDN 18


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 267 WSSKRCRTYWSSKRC 311
           W S  C  YW++K C
Sbjct: 98  WGS--CNNYWNTKNC 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 252 CCFAILCWCCSNPA 211
           CC+  +CW  + PA
Sbjct: 488 CCWWKICWTITTPA 501


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -3

Query: 252 CCFAILCWCCSNPA 211
           CC+  +CW  + PA
Sbjct: 541 CCWWKICWTITTPA 554


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +2

Query: 107 QTLVQIHTGNVL-----EVLDHMGSRQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLE 271
           +TL  +H+  +L     E    M ++Q+ QQ+Q + +  +   +  Q    +Q +    +
Sbjct: 396 RTLNTLHSEKLLAFKMTEQQQQMQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455

Query: 272 QQE 280
           QQ+
Sbjct: 456 QQQ 458


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +3

Query: 300 SKRCSVGCSYRSSKWSCNRGYGRSE 374
           S  CS   S RSS  S +R   RSE
Sbjct: 18  SNTCSNSQSQRSSGSSISRNSNRSE 42


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = +2

Query: 173  RMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVP 286
            + QQ+Q + ++P    +Q Q    +  +    +QQ+ P
Sbjct: 1506 QQQQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQP 1543


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,194
Number of Sequences: 438
Number of extensions: 2496
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)