Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G12f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing ... 33 0.12
At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein... 32 0.27
At1g32190.1 68414.m03959 expressed protein 31 0.36
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ... 31 0.62
At5g17890.1 68418.m02098 LIM domain-containing protein / disease... 29 1.9
At1g03230.1 68414.m00301 extracellular dermal glycoprotein, puta... 29 1.9
At2g33330.1 68415.m04085 33 kDa secretory protein-related contai... 29 2.5
At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing ... 28 3.3
At1g65295.1 68414.m07404 expressed protein 28 3.3
At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to ribo... 28 3.3
At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger) pr... 27 5.8
At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to ribo... 27 7.7
At1g25540.1 68414.m03171 phytochrome and flowering time regulato... 27 7.7
At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family pr... 27 7.7
At1g03220.1 68414.m00300 extracellular dermal glycoprotein, puta... 27 7.7
>At4g14770.1 68417.m02272 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 658
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/65 (29%), Positives = 25/65 (38%)
Frame = +3
Query: 183 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 362
R+ +SV D S T R GC S + Y + VGCS C +
Sbjct: 422 RNSDSVQETGDDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNAF 481
Query: 363 GRSEG 377
GR +G
Sbjct: 482 GRKDG 486
>At3g22760.1 68416.m02870 CXC domain containing TSO1-like protein 1
(SOL1) identical to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain; supporting cDNA
gi|7767426|gb|AF205142.1|AF205142
Length = 609
Score = 31.9 bits (69), Expect = 0.27
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = +3
Query: 183 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 362
R+ +S+ +D S T R GC S + Y + VGCS C +
Sbjct: 391 RNSDSIIEVGEDASKTPASARHKRGCNCKKSNCLKKYCECYQGGVGCSINCRCEGCKNAF 450
Query: 363 GRSEG 377
GR +G
Sbjct: 451 GRKDG 455
>At1g32190.1 68414.m03959 expressed protein
Length = 422
Score = 31.5 bits (68), Expect = 0.36
Identities = 24/78 (30%), Positives = 28/78 (35%), Gaps = 11/78 (14%)
Frame = -3
Query: 369 SCRSPCCNSICCSYSCTLRCTFCYSNRCGT-----SCCSSSGIL---CCFAILCWCCSNP 214
SC P C CS C C+ C T SCC + CC C C
Sbjct: 306 SCPKPRCPKPSCSCGCGCGDCGCFKCSCPTLKGCFSCCKKPSCVSSCCCPTFKCSSC--- 362
Query: 213 ASGSLHSP-CSC--CIRC 169
G P CSC C++C
Sbjct: 363 -FGKPKCPKCSCWKCLKC 379
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 15/62 (24%)
Frame = -3
Query: 366 CRSPCCNSICC--SYSCTL-------------RCTFCYSNRCGTSCCSSSGILCCFAILC 232
C+ P C S CC ++ C+ +C C C S C SG CF+ LC
Sbjct: 343 CKKPSCVSSCCCPTFKCSSCFGKPKCPKCSCWKCLKCPDTECCRSSCCCSG---CFSWLC 399
Query: 231 WC 226
C
Sbjct: 400 CC 401
Score = 28.3 bits (60), Expect = 3.3
Identities = 25/78 (32%), Positives = 26/78 (33%), Gaps = 2/78 (2%)
Frame = -3
Query: 408 QGIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSC-CSSSGIL-CCFAIL 235
Q I D STG CC S C SC+ C C C C G C L
Sbjct: 284 QEIRRRDESTG-------CCCSGLCRPSCSCPKPRCPKPSCSCGCGCGDCGCFKCSCPTL 336
Query: 234 CWCCSNPASGSLHSPCSC 181
C S S S C C
Sbjct: 337 KGCFSCCKKPSCVSSCCC 354
>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425
Length = 695
Score = 30.7 bits (66), Expect = 0.62
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = +3
Query: 183 RSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKWSCNRGY 362
R+ +S+ D S T R GC S + Y + VGCS C +
Sbjct: 464 RNADSIMEASDDASKTPASARHKRGCNCKKSNCMKKYCECYQGGVGCSMNCRCEGCTNVF 523
Query: 363 GRSEG 377
GR +G
Sbjct: 524 GRKDG 528
>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
resistance protein-related low similarity to disease
resistance protein RPP4 [Arabidopsis thaliana]
GI:20270890; contains Pfam profiles PF00412: LIM domain,
PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
Length = 1613
Score = 29.1 bits (62), Expect = 1.9
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = -3
Query: 213 ASGSL-HSPCSCCIRCRLPI 157
A GS+ H C CC+RCR PI
Sbjct: 1255 AYGSVWHPQCFCCLRCREPI 1274
>At1g03230.1 68414.m00301 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 434
Score = 29.1 bits (62), Expect = 1.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 363 RSPCCNSICCSYSCTLRCTFCYS 295
RSP CNS CS + ++ C C+S
Sbjct: 83 RSPRCNSAVCSRAGSIACGTCFS 105
>At2g33330.1 68415.m04085 33 kDa secretory protein-related contains
Pfam PF01657: Domain of unknown function, duplicated in
33 KDa secretory proteins
Length = 304
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -3
Query: 405 GIESFDSSTGLRSCRSPCCNSICCSYSCTLRCTFCYSNRCGTSCCSSSGILCCFAI 238
G S S TGL CR N+ C Y+C R CG + + + C+ +
Sbjct: 79 GTTSQTSVTGLFQCRGDLSNNDC--YNCVSRLPVLSGKLCGKTIAARVQLSGCYLL 132
>At3g04850.1 68416.m00526 tesmin/TSO1-like CXC domain-containing
protein similar to CXC domain containing TSO1-like
protein 1 (SOL1) [Arabidopsis thaliana] GI:7767427, CXC
domain protein TSO1 [Arabidopsis thaliana] GI:7767425;
contains Pfam profile PF03638: Tesmin/TSO1-like CXC
domain
Length = 639
Score = 28.3 bits (60), Expect = 3.3
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = +3
Query: 165 AGSVCSRSRESVGSRWQDWSSTSIVWRSSIGCRYWSSKRCRTYWSSKRCSVGCSYRSSKW 344
A V S S ++V W + S T R GC S + Y VGCS
Sbjct: 511 APKVVSTS-DTVIDLWVENSKTPASARHKRGCNCRKSGCSKKYCECFMMGVGCSSNCRCM 569
Query: 345 SCNRGYGRSEGRC 383
C +G + +C
Sbjct: 570 GCKNTFGHTNEQC 582
>At1g65295.1 68414.m07404 expressed protein
Length = 115
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = -3
Query: 237 LCWCCSNPASGSLHSPCSCCIRCRLP 160
+C CC L SPC I C +P
Sbjct: 69 VCTCCGGAKGLCLPSPCCYAINCNIP 94
>At1g26820.1 68414.m03268 ribonuclease 3 (RNS3) identical to
ribonuclease SP:P42815 Ribonuclease 3 precursor (EC
3.1.27.1) {Arabidopsis thaliana}
Length = 222
Score = 28.3 bits (60), Expect = 3.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 360 YGRSEGRCCYQRTQCPAGDINLCSVWRN 443
Y S CCY +T PA D + +W N
Sbjct: 35 YCDSRHSCCYPQTGKPAADFGIHGLWPN 62
>At2g35330.1 68415.m04332 zinc finger (C3HC4-type RING finger)
protein-related contains weak hit to Pfam profile:
PF00097 zinc finger, C3HC4 type (RING finger); weak
similarity to RING finger protein 8 (Swiss-Prot:O76064)
[Homo sapiens]
Length = 738
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Frame = -3
Query: 252 CCFAILCWCCSNPASGSLHSPCSCC---IRCRLPIWSSTS 142
C ++C CS+ GS + C CC ++ R+ ++ ++S
Sbjct: 699 CAHQVVCASCSDSFMGSGKATCPCCRAPVQQRIRVFGASS 738
>At2g02990.1 68415.m00251 ribonuclease 1 (RNS1) identical to
ribonuclease SP:P42813 Ribonuclease 1 precursor (EC
3.1.27.1) {Arabidopsis thaliana}, GI:561998 from
[Arabidopsis thaliana]
Length = 230
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 360 YGRSEGRCCYQRTQCPAGDINLCSVWRN 443
Y ++ +CCY + PA D + +W N
Sbjct: 43 YCDTQKKCCYPNSGKPAADFGIHGLWPN 70
>At1g25540.1 68414.m03171 phytochrome and flowering time regulatory
protein (PFT1) PMID: 12815435
Length = 836
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 167 RQRMQQEQGECREPLAGLEQHQHSMAKQHRMPLLEQQEVPH 289
+Q++ Q+Q + ++ +Q QH +Q +MP L+QQ+ H
Sbjct: 686 QQQLHQQQQQQQQIQQQQQQQQH--LQQQQMPQLQQQQQQH 724
>At1g17160.1 68414.m02092 pfkB-type carbohydrate kinase family
protein contains Pfam profile: PF00294 pfkB family
carbohydrate kinase
Length = 379
Score = 27.1 bits (57), Expect = 7.7
Identities = 17/62 (27%), Positives = 28/62 (45%)
Frame = +2
Query: 11 NFISSTIQTISTNKSLF*VFVERPCVLFQSIEQTLVQIHTGNVLEVLDHMGSRQRMQQEQ 190
N + +I +S N++ P F+ I Q + + H V +VL +GS+ Q
Sbjct: 243 NELLDSIDILSPNETELSRLTGMPTETFEQISQAVAKCHKLGVKQVLVKLGSKGSALFIQ 302
Query: 191 GE 196
GE
Sbjct: 303 GE 304
>At1g03220.1 68414.m00300 extracellular dermal glycoprotein,
putative / EDGP, putative similar to extracellular
dermal glycoprotein EDGP precursor [Daucus carota]
GI:285741
Length = 433
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 363 RSPCCNSICCSYSCTLRCTFCYS-NRCGTSCCSSSGI 256
+SP CNS CS + + C C+S R G S + GI
Sbjct: 82 QSPRCNSAVCSRAGSTSCGTCFSPPRPGCSNNTCGGI 118
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,797,382
Number of Sequences: 28952
Number of extensions: 183882
Number of successful extensions: 677
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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