Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G11f
         (521 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6ZVA9 Cluster: CDNA FLJ42813 fis, clone BRCAN2012355; ...    34   1.7  
UniRef50_Q058C0 Cluster: Type III protein export, membrane compo...    33   5.2  
UniRef50_UPI0000498329 Cluster: protein phosphatase; n=1; Entamo...    32   9.2  

>UniRef50_Q6ZVA9 Cluster: CDNA FLJ42813 fis, clone BRCAN2012355;
           n=1; Homo sapiens|Rep: CDNA FLJ42813 fis, clone
           BRCAN2012355 - Homo sapiens (Human)
          Length = 180

 Score = 34.3 bits (75), Expect = 1.7
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = -2

Query: 493 VVFYSELDYCIQITVYKAQIAISNFTCSHNYSIMYLLKQCIHNVCIGNTKIILH*KILYD 314
           V  Y+ +  C+ I +Y   I +  +TC   Y  MY L  C +        I +H  I+Y 
Sbjct: 101 VYIYTHIHICVHINMY-VSIYVYIYTCIQIYIYMYTLYVCTYTYMCTYIHICIHTSIIYV 159

Query: 313 INYM 302
             Y+
Sbjct: 160 CVYI 163


>UniRef50_Q058C0 Cluster: Type III protein export, membrane
           component; n=1; Buchnera aphidicola str. Cc (Cinara
           cedri)|Rep: Type III protein export, membrane component
           - Buchnera aphidicola subsp. Cinara cedri
          Length = 266

 Score = 32.7 bits (71), Expect = 5.2
 Identities = 16/71 (22%), Positives = 38/71 (53%)
 Frame = -3

Query: 465 VYRLLYIKHRLLSVILHVATTIVLCTYLNNVYITFVSEIRKSFCTERYYMI*IT*FNGTF 286
           V+ LL+      ++ ++  T I++   L+++ I F+S  + +FCT  +++I +       
Sbjct: 24  VFSLLFYLKIFQNIKINYFTKIIIIYLLSSLLIPFISVYKNNFCTIDFFLIFLNQIFIGI 83

Query: 285 RIGYIAANLSF 253
            +G++  N+ F
Sbjct: 84  VLGFLIKNVLF 94


>UniRef50_UPI0000498329 Cluster: protein phosphatase; n=1; Entamoeba
           histolytica HM-1:IMSS|Rep: protein phosphatase -
           Entamoeba histolytica HM-1:IMSS
          Length = 333

 Score = 31.9 bits (69), Expect = 9.2
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 374 TLFK*VHNTIVVATCKITDSNLCFIYSNLYTVI 472
           TLF+ VH+TI+ +T   T + L  IYSN  T++
Sbjct: 162 TLFEKVHSTIIKSTESGTTATLALIYSNKITLV 194


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,550,446
Number of Sequences: 1657284
Number of extensions: 7980749
Number of successful extensions: 15296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15292
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 32619212418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)