Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G10f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    32   0.045
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   1.7  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   5.2  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    25   5.2  
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr...    25   6.8  
SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomy...    25   9.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    25   9.0  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    25   9.0  

>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 32.3 bits (70), Expect = 0.045
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 350 SAHHRLRCYSITSAFKSYSFRHTLH---HNAVHGYPSNPVLCHSTVKTFSEILTVIFVH 517
           S  HR+ C S +++  SY+ ++ +H     +   Y  NP L        +++L+V+F H
Sbjct: 52  SCRHRMECLSRSTSQSSYADQNQVHLDSERSFFQYKLNPFLLRKHRSQLTKLLSVVFKH 110


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -2

Query: 166 ASSGLANILRVIRASAVKTVSDNNLRANIAECTIY-ACTTGLFNVNDT 26
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 214 STIGSSYLTFPPLSIFASSGLANILR 137
           S + S  L+ PP+S F  S   NILR
Sbjct: 132 SQMMSKRLSLPPMSQFTDSDFVNILR 157


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 147 FANPEDAKMLRGGKVKYDDPIVE 215
           FANPE+ K+L+   V+  D ++E
Sbjct: 621 FANPEETKILKNDSVESYDWLIE 643


>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/60 (20%), Positives = 29/60 (48%)
 Frame = +3

Query: 297 PAATFATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTAL 476
           P AT A+ +F ++ +  ++ + +  +  + +   +      Y+I+ Y+G+      V AL
Sbjct: 19  PLATKASFIFSVYIIIGLIISYLLQIFRIVRLGSSQGLSFSYLILGYIGVLNAFSNVIAL 78


>SPBC16G5.18 |erg24||C-14 sterol reductase Erg24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 424

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/43 (30%), Positives = 19/43 (44%)
 Frame = +3

Query: 45  NPVVQAYIVHSAILALKLLSLTVFTALARMTRRIFANPEDAKM 173
           +PV    +   AIL L+ L   +F        R  +NP D K+
Sbjct: 287 HPVDLGLVKTLAILCLQFLGYYIFRGANGQKNRFRSNPNDPKL 329


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 20/96 (20%), Positives = 37/96 (38%), Gaps = 6/96 (6%)
 Frame = +2

Query: 251 YSGILDTRSVLCDYWTGSNIRNASFP----IVYRVPYSAHHRLRCYSITSAFKSYSFRHT 418
           Y  +     ++   W  S   +A FP    +   +  +    L  +SI   F     R+ 
Sbjct: 311 YQNVYSANGMVMSRWVDS--LSAYFPGLLVLAGELELAKKMHLYYFSIYLKFGQLPERYN 368

Query: 419 LHHNAV--HGYPSNPVLCHSTVKTFSEILTVIFVHL 520
           L+  ++  +GYP  P    ST   +     V ++H+
Sbjct: 369 LYTKSIELNGYPLRPEFAESTYYLYRATKDVFYLHV 404


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 335 YRVPYSAHHRLRCYSITSAFKSYSFRHTLHHNAVHGYPSNPVLC 466
           Y V Y      +     S +  +SF H    +A+ G  +N +LC
Sbjct: 416 YEVRYGTRVTGQSIRDASCYFVWSFYHCYSKSAIEGLQTNLILC 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,391
Number of Sequences: 5004
Number of extensions: 43298
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)