Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G10f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1101 - 30408944-30410410                                         29   1.7  
07_03_1394 + 26254438-26254950                                         28   4.0  
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381...    28   5.2  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    28   5.2  
03_06_0390 + 33574495-33575976                                         28   5.2  
01_01_0839 - 6540971-6541978,6542076-6542240,6542330-6542419,654...    27   6.9  
12_02_0763 + 22953749-22953884,22955036-22955199,22955695-229563...    27   9.1  
01_04_0027 + 15216424-15216672                                         27   9.1  

>03_05_1101 - 30408944-30410410
          Length = 488

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 238 FKWARRILSTIGSSYLTFPPLSIFASSGLANILRVIRASAVK 113
           F WA  I + +G   LTF P+ +F    + N++  +RA  ++
Sbjct: 132 FWWATDIAAELGVPRLTFSPVGVFPQLAMNNLV-TVRAEIIR 172


>07_03_1394 + 26254438-26254950
          Length = 170

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -2

Query: 394 EG*GNGITA*TMVCRIRNTVNNRKRSVANVAAG 296
           +G G+G  A   VCR+R  +  R+R VA  AAG
Sbjct: 26  DGDGDGEEAAAGVCRVRRQLRLRRRVVAAGAAG 58


>10_01_0345 -
           3811057-3811236,3811342-3811615,3811732-3812289,
           3812602-3812747,3812930-3813097,3813896-3814003,
           3814859-3815029,3816557-3816949,3817522-3817617,
           3817715-3817774,3818600-3818744,3819296-3819520,
           3820106-3820254
          Length = 890

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = -3

Query: 360 WCAEYGTR*TIGKEALRMLLPVQ*SHKTLRVSKMPEYSPNRSSGLG-EFSQ 211
           WC++ GTR       L  L+P++ S  +  ++  P +S   SSG G  FSQ
Sbjct: 236 WCSDLGTR---SNNELA-LIPLEPSTSSFSIAGGPAFSNGFSSGFGSSFSQ 282


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
 Frame = +2

Query: 245 GEYSGILDTRSVLCDYWTGSNIRNASFPIVYRVPYSAHHRLRCYSITSAFK----SYSFR 412
           G +  I+  +S  C YW        +    + +P      +   S+TSA       YS  
Sbjct: 175 GNWKTIMHEQSNQCYYWN-----TVTGETSWEIPNVLASEIAADSVTSASAPTHVDYSME 229

Query: 413 ---HTLHHNAVHGYPSNPVLCHSTV 478
              H L HNAV  YPS+  + + +V
Sbjct: 230 AQAHALTHNAVEAYPSDISVLNGSV 254


>03_06_0390 + 33574495-33575976
          Length = 493

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 238 FKWARRILSTIGSSYLTFPPLSIFASSGLANILRV 134
           F WA  + + +G   LTF P+ +F    + N++ V
Sbjct: 131 FWWATGVAAELGVPRLTFNPVGVFPQLAMNNLVAV 165


>01_01_0839 -
           6540971-6541978,6542076-6542240,6542330-6542419,
           6542536-6542736,6542886-6543098,6543216-6543461
          Length = 640

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +2

Query: 287 DYWTGSNIRNASFPIVY--RVPYSAHHR 364
           DY  GSN R  S+ + Y  R P  AHHR
Sbjct: 408 DYILGSNPRGISYMVGYGARYPRRAHHR 435


>12_02_0763 +
           22953749-22953884,22955036-22955199,22955695-22956307,
           22968553-22968874,22969107-22969373,22969692-22970460
          Length = 756

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -1

Query: 467 DIIQDYLDTHVQHYDVRYAESYSS*RLR*WNNSV 366
           D I++++  HV HY    ++ YS   L  W N V
Sbjct: 530 DSIKEWVSDHVNHYYPSASDIYSDEELHGWWNEV 563


>01_04_0027 + 15216424-15216672
          Length = 82

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 431 AVHGYPSNPVLCHSTVKTFSEILTVIFVHL 520
           A+HG P+N  +   TV+   ++L V   HL
Sbjct: 29  ALHGIPTNQKIVDETVEKLKKVLEVYEAHL 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,419
Number of Sequences: 37544
Number of extensions: 261516
Number of successful extensions: 642
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)