Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G10f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)                       31   0.44 
SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.76 
SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)                 31   0.76 
SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)                  29   2.3  
SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)                     28   4.1  
SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)         28   4.1  
SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)               28   4.1  
SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)                28   4.1  
SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)             27   7.1  
SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)                 27   9.4  

>SB_10588| Best HMM Match : Sec63 (HMM E-Value=0)
          Length = 1047

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 127 HV*HEEYLLIQRMRKCSEEERSSTMTLSLREFAEP 231
           H+ H EYLL+Q+ +  SEE +S   T+ + E   P
Sbjct: 71  HIYHSEYLLLQKKQVLSEEPQSLVFTIPIFEPLPP 105


>SB_19130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 658

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +3

Query: 183 GKVKYDDPIVERIRRAHLN 239
           GK+KYDDP+ E++R+A  N
Sbjct: 373 GKMKYDDPLFEKVRQAKEN 391


>SB_16065| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
          Length = 399

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 347 YSAHHRLR-CYSITSAFKSYSFRHTLHHNA-VHGYPSNPVLCHSTVKT 484
           Y +HH L   + +TS F  Y+  H LHH + V  + +  +  H+ + T
Sbjct: 195 YISHHALLPTFRVTSHFSRYTSHHALHHTSRVASHTTRYISHHALIPT 242


>SB_30423| Best HMM Match : Filament (HMM E-Value=3.3)
          Length = 355

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 244 WRIFRHFGYSERFM*LLDRQQHSQRFFSDCLPCS 345
           W  FR F  +   + L    + S R FSDC+PCS
Sbjct: 7   WAAFRAFSLA-LLVALSPALERSLRMFSDCMPCS 39


>SB_58390| Best HMM Match : DUF1167 (HMM E-Value=0)
          Length = 734

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = -2

Query: 355 CRIRNTVNNRKRSVANVAAGPVVT*NAPSIQNAGIFSKSFKWARRILSTIGSSYLTFPPL 176
           CR R     RK S    ++  V   + P+    G +S      R + ++  SSY  FP  
Sbjct: 248 CRKRTISEKRKVSRCQSSSHFVFIASWPNPSIFGTYSPHRSSIRSVANSSISSYQDFPRT 307

Query: 175 SIFASSGLA 149
           +++ S G+A
Sbjct: 308 TVYRSEGMA 316


>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 350  SAHHRLRCYSITSAFKSYSFRHTLHHNAVHGYPSNPVLCHSTVKT 484
            SAH ++    I      Y +R     N+    P++P+LCH   KT
Sbjct: 3433 SAHAQMFVTMIEGPALHYRYRSLSDRNSTLQLPTHPLLCHLARKT 3477


>SB_27437| Best HMM Match : Peptidase_M48 (HMM E-Value=8.4e-07)
          Length = 185

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -2

Query: 313 ANVAAGPVVT*NAPSIQNAGIFSKSFKWARRILSTIGSSYLTFPPLSI 170
           +N+ AG ++   AP    AGI   +   +R  L+  G++Y+T  PLS+
Sbjct: 122 SNIFAGILIAILAPMA--AGIIQMAISRSREYLADEGAAYMTEDPLSL 167


>SB_22693| Best HMM Match : DUF1042 (HMM E-Value=0.00027)
          Length = 2261

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +1

Query: 136 HEEYLLIQRMRKCSEEERSSTMTLSLREFAEPT*TIWRIFRHFGYSER----FM*LLDRQ 303
           H E +L+ R+ + S++ER   + L      +      RIFR   Y+ER    F   L+R+
Sbjct: 523 HREEMLVNRLMRQSQQERRIAVQLMQTRHEKEVIRQNRIFREQQYAERRLKDFDDALERE 582

Query: 304 ---QHSQRF 321
              +H++RF
Sbjct: 583 ASLRHTRRF 591


>SB_12399| Best HMM Match : DUF885 (HMM E-Value=2.3e-08)
          Length = 718

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 273 GAFYVTTGPAATF-ATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLY-MGI 446
           GAFY+      +   T +   +     LH + +  I  P P   I + +P++++ Y +  
Sbjct: 503 GAFYLAPPEDGSRPGTFMVNTYKHEESLHPVPFMFITYPVPLMVITYPVPFMVITYPVPF 562

Query: 447 QVILYYV 467
            VI Y V
Sbjct: 563 MVITYPV 569


>SB_21584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1750

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -2

Query: 229 ARRILSTIGSSYLTFPPLSIFASSGLANIL 140
           AR + STIG S  + PP+S+ +   LAN L
Sbjct: 183 ARTVPSTIGHSGASSPPISLGSMGNLANEL 212


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/48 (35%), Positives = 21/48 (43%)
 Frame = +2

Query: 356 HHRLRCYSITSAFKSYSFRHTLHHNAVHGYPSNPVLCHSTVKTFSEIL 499
           HH   C+   S F       T H+       S+P+LCH T   FS IL
Sbjct: 126 HHHHLCHHHLSLFVCLP---TQHYFPAFQVQSSPLLCHCTHDDFSGIL 170


>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
          Length = 1531

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 12   CVYKMVSLTLNNPVVQAYIVHSAILAL 92
            CVY +++LT NN  V   +VH   L +
Sbjct: 1177 CVYSVLALTANNAKVAGLLVHGISLQI 1203


>SB_18722| Best HMM Match : RVT_1 (HMM E-Value=2.8e-08)
          Length = 421

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 238 TIWRIFRHFGYSER 279
           T+WR+ RH+G SE+
Sbjct: 72  TLWRLLRHYGVSEK 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,889,012
Number of Sequences: 59808
Number of extensions: 321926
Number of successful extensions: 943
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)