Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G10f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical pr...    31   0.50 
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    30   0.87 
AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine...    30   1.2  
AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical ...    29   1.5  
AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine re...    28   4.7  
AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase assoc...    27   6.2  
U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical ...    27   8.1  

>Z46792-4|CAA86767.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 92   QVIITNSFYSTSTYDTKNIC*SRGCENAQRRKGQVR*PYR*ENSPSPLERFGEYS 256
            +++I+N+FYS S +DT  I  S+   N+         P R E +P PL  +  +S
Sbjct: 1313 ELMISNNFYSFSCFDTNVITCSK--SNSTSESSSTSSPRRAEKAPVPLPDYEGHS 1365


>Z46791-8|CAA86762.2| 1531|Caenorhabditis elegans Hypothetical protein
            C09G5.8 protein.
          Length = 1531

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 18/55 (32%), Positives = 29/55 (52%)
 Frame = +2

Query: 92   QVIITNSFYSTSTYDTKNIC*SRGCENAQRRKGQVR*PYR*ENSPSPLERFGEYS 256
            +++I+N+FYS S +DT  I  S+   N+         P R E +P PL  +  +S
Sbjct: 1313 ELMISNNFYSFSCFDTNVITCSK--SNSTSESSSTSSPRRAEKAPVPLPDYEGHS 1365


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +3

Query: 309 FATLLFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYV 467
           FATL+     +F   +TIV+   P  + S    FG+  +I + MGI  I   V
Sbjct: 32  FATLIAVTSIIFNTFYTIVFIRNPSLRRSGLFYFGVIAVIDIIMGINYIAVMV 84


>AC006631-5|AAF39790.3|  469|Caenorhabditis elegans Acetylcholine
           receptor protein 21 protein.
          Length = 469

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 407 FRHTLHHNAVHGYPSNPVLCHSTVKTFSEILTV 505
           F   +HH  VHGYP  P L     +  S+IL V
Sbjct: 290 FTVNIHHTGVHGYPVPPFLQIFAFRYLSKILFV 322


>AC006717-1|AAY55883.2|  101|Caenorhabditis elegans Hypothetical
           protein Y14H12A.2 protein.
          Length = 101

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +1

Query: 313 QRFFSD-CLPCSVFCTPSFTLLFHYLS 390
           Q +FSD C  C+V+C PS  L+ +Y +
Sbjct: 64  QTWFSDNCWSCTVYCIPSNRLIHYYFN 90


>AF039049-1|AAB94253.1|  299|Caenorhabditis elegans Serpentine
           receptor, class x protein68 protein.
          Length = 299

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 15  VYKMVSLTLNNPVVQAYIVHSAILALKLLSLTVFTALARMTRRIFA 152
           +Y    + L++P ++AY  H   + L    L+VFT  A    R FA
Sbjct: 58  LYFCPMVLLDHPFLKAYSHHCGFVILFCYELSVFTHFAISINRFFA 103


>AC006638-2|AAK85481.1| 1256|Caenorhabditis elegans Cyclase
           associated protein homologprotein 1, isoform a protein.
          Length = 1256

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 PIVYRVPYSAHHRLRCYSITSAFKSY-SFRHTLHHNAVHGYPSNPVLCHSTV 478
           P  Y    S HH  R  + T +  S+ S  +T  +N  +  PSN  L HSTV
Sbjct: 272 PQHYNSNSSDHHPPRRLAKTQSDLSFDSLNNTYFNNTSNHTPSNTFLNHSTV 323


>U50068-4|AAB37733.1|  287|Caenorhabditis elegans Hypothetical
           protein C01G5.5 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +3

Query: 177 RGGKVKYDDPIVERIRRAHLNDLENIPAFWILGAFYVTTGPAAT 308
           RG K    D  +ERI   H   + N+   WI+   Y     + T
Sbjct: 203 RGNKTLLGDSTMERIALCHKTTVANVILAWIMKGKYGVVAKSVT 246


>AL132951-1|CAC44310.2|  707|Caenorhabditis elegans Hypothetical
           protein Y67H2A.1 protein.
          Length = 707

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 83  ISPQVIITNSFYSTSTYDTKNI 148
           I+PQV+IT S Y T T++ + +
Sbjct: 197 ITPQVLITESTYGTQTHEDRAV 218


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,728,368
Number of Sequences: 27780
Number of extensions: 238047
Number of successful extensions: 718
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)