Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G10f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14250.1 68414.m01687 nucleoside phosphatase family protein /...    29   1.4  
At1g14230.1 68414.m01684 nucleoside phosphatase family protein /...    29   2.5  
At1g43650.1 68414.m05011 integral membrane family protein / nodu...    27   5.8  
At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger) fa...    27   7.7  

>At1g14250.1 68414.m01687 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P97687
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Rattus norvegicus}; contains
           Pfam profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 488

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +3

Query: 213 ERIRRAHLNDLENIPAFWILGAFYVTT 293
           ERI+ A     ENIP  W LGAF + T
Sbjct: 444 ERIKYASKAGKENIPLDWALGAFILNT 470


>At1g14230.1 68414.m01684 nucleoside phosphatase family protein /
           GDA1/CD39 family protein low similarity to SP|P49961
           Ectonucleoside triphosphate diphosphohydrolase 1 (EC
           3.6.1.5) (Ecto-apyrase) {Homo sapiens}; contains Pfam
           profile PF01150: GDA1/CD39 (nucleoside phosphatase)
           family
          Length = 503

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = +3

Query: 213 ERIRRAHLNDLENIPAFWILGAFYVTTGPAATF 311
           ERI+ A     E+IP  W LGAF + T   ATF
Sbjct: 452 ERIKYASKAGEEDIPLDWALGAFILNTA-TATF 483


>At1g43650.1 68414.m05011 integral membrane family protein / nodulin
           MtN21-related similar to MtN21 GI:2598575 (root nodule
           development) from [Medicago truncatula]similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 343

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 321 LFRLFTVFRILHTIVYAVIPLPQPSR-AIAFGIPYIIMLYMGIQV 452
           L  L  +F  + + V+AV     PS   I FG+P + M Y GI V
Sbjct: 209 LVALQCLFSCIQSAVWAVAVNRNPSVWKIEFGLPLLSMAYCGIMV 253


>At5g57750.1 68418.m07219 zinc finger (C3HC4-type RING finger)
           family protein similar to RING-H2 zinc finger protein
           ATL4 [Arabidopsis thaliana] GI:4928399; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 210

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 423 IIMLYMGIQVILYYVTAL*RLLVKY 497
           I++LY+ +  I+++V AL  LLVK+
Sbjct: 35  IVLLYITLLSIIFFVAALIHLLVKF 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,846,190
Number of Sequences: 28952
Number of extensions: 214869
Number of successful extensions: 592
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)