BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ovS307G09f (521 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 1.7 SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 26 3.0 SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S... 26 3.9 SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2 SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2 SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2 SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 5.2 SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe... 25 6.8 >SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1465 Score = 27.1 bits (57), Expect = 1.7 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%) Frame = -3 Query: 186 IS*TITRDIYL-FKTKNVYWHIMLSTTNCLLYILQ 85 I+ I IY+ +KTKN+ W+ T C + LQ Sbjct: 53 IALVIITQIYVGYKTKNIGWNFFSVVTYCFVLFLQ 87 >SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1313 Score = 26.2 bits (55), Expect = 3.0 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -1 Query: 521 RPVNCNTTHYRANWVPGPPSRNSIKSMS 438 +P N H + VPGPP+ N ++ S Sbjct: 888 KPAESNLNHLTSAKVPGPPAFNELEYQS 915 >SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|Schizosaccharomyces pombe|chr 1|||Manual Length = 513 Score = 25.8 bits (54), Expect = 3.9 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = +1 Query: 394 YWPRDTKSICLSFGTDIDFIEFLE 465 YWP+D ++ FGT+ D I+ + Sbjct: 104 YWPQDLYTLNPHFGTEQDLIDLAD 127 >SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461 TRL+ +I N I SN +A G+ I I+W F+++P Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221 >SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461 TRL+ +I N I SN +A G+ I I+W F+++P Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221 >SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461 TRL+ +I N I SN +A G+ I I+W F+++P Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221 >SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 25.4 bits (53), Expect = 5.2 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461 TRL+ +I N I SN +A G+ I I+W F+++P Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221 >SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 25.0 bits (52), Expect = 6.8 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%) Frame = -3 Query: 312 WPKTLTTRARRKQMKTQPLCLIVIEL*QKKK-SIRYII*YVLVI 184 W +TT+A + +C+ VI+L KK+ R II Y++++ Sbjct: 901 WVSAITTKALASCPCNKGVCMDVIDLLLKKEMESRAIICYIIML 944 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,096,732 Number of Sequences: 5004 Number of extensions: 42071 Number of successful extensions: 84 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 84 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 212331630 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -