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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G09f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    27   1.7  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    26   3.0  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    26   3.9  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   5.2  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   5.2  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   5.2  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   5.2  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.8  

>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 186 IS*TITRDIYL-FKTKNVYWHIMLSTTNCLLYILQ 85
           I+  I   IY+ +KTKN+ W+     T C +  LQ
Sbjct: 53  IALVIITQIYVGYKTKNIGWNFFSVVTYCFVLFLQ 87


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 521 RPVNCNTTHYRANWVPGPPSRNSIKSMS 438
           +P   N  H  +  VPGPP+ N ++  S
Sbjct: 888 KPAESNLNHLTSAKVPGPPAFNELEYQS 915


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 394 YWPRDTKSICLSFGTDIDFIEFLE 465
           YWP+D  ++   FGT+ D I+  +
Sbjct: 104 YWPQDLYTLNPHFGTEQDLIDLAD 127


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +3

Query: 330 TRLSLRISKNRKYNF*ITVSNLLATGYQIYLSIIWN*HRFYRIP 461
           TRL+ +I  N      I  SN +A G+ I   I+W    F+++P
Sbjct: 179 TRLNKKIILNTIVTSFICWSNAIALGFCIIACILWR-MIFFKVP 221


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 312  WPKTLTTRARRKQMKTQPLCLIVIEL*QKKK-SIRYII*YVLVI 184
            W   +TT+A       + +C+ VI+L  KK+   R II Y++++
Sbjct: 901  WVSAITTKALASCPCNKGVCMDVIDLLLKKEMESRAIICYIIML 944


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,732
Number of Sequences: 5004
Number of extensions: 42071
Number of successful extensions: 84
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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