Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G09f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1080 - 11053879-11053881,11054140-11054244,11055158-110551...    29   3.0  
09_02_0403 + 8590195-8590443,8590583-8590690,8590788-8590901,859...    27   9.1  

>08_01_1080 -
           11053879-11053881,11054140-11054244,11055158-11055174,
           11055583-11055790
          Length = 110

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/41 (41%), Positives = 20/41 (48%)
 Frame = +3

Query: 369 NF*ITVSNLLATGYQIYLSIIWN*HRFYRIPRGGARYPIRP 491
           NF +TV+ L   GY IYL + W      RI  GG   P  P
Sbjct: 15  NFVLTVAGLAMVGYGIYLLVEW-----MRISGGGGGAPPSP 50


>09_02_0403 +
           8590195-8590443,8590583-8590690,8590788-8590901,
           8590998-8591210
          Length = 227

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 343 FVSLKIVSTIFRSLSQTYWPRDTKSICLSF 432
           F+ L+  +TI   L  T+WP  T+S  +SF
Sbjct: 193 FLRLESPATISSELKSTFWPMLTESTDISF 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,553,860
Number of Sequences: 37544
Number of extensions: 228665
Number of successful extensions: 353
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 353
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)