Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G09f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)              40   0.002
SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)                   40   0.002
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)                  40   0.002
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                40   0.002
SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)           40   0.002
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)                       40   0.002
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.002
SB_4159| Best HMM Match : Vpu (HMM E-Value=2)                          40   0.002
SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)                    37   0.009
SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)                    35   0.035
SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)                     35   0.035
SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.035
SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.14 
SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        28   4.1  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_40521| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   27   9.4  
SB_34139| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 11  RPVNCNTTHYRANW 24


>SB_26639| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 287

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 67  RPVNCNTTHYRANW 80


>SB_25723| Best HMM Match : Vicilin_N (HMM E-Value=0.0045)
          Length = 2506

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 635 RPVNCNTTHYRANW 648


>SB_17217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 46  RPVNCNTTHYRANW 59


>SB_12571| Best HMM Match : SBF (HMM E-Value=1.6e-37)
          Length = 257

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 8   RPVNCNTTHYRANW 21


>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
          Length = 117

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 48  RPVNCNTTHYRANW 61


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521  RPVNCNTTHYRANW 480
            RPVNCNTTHYRANW
Sbjct: 1886 RPVNCNTTHYRANW 1899


>SB_55621| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 46  RPVNCNTTHYRANW 59


>SB_46370| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 8   RPVNCNTTHYRANW 21


>SB_29769| Best HMM Match : TNFR_c6 (HMM E-Value=3.60001e-40)
          Length = 768

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 40  RPVNCNTTHYRANW 53


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 89  RPVNCNTTHYRANW 102


>SB_12056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 67  RPVNCNTTHYRANW 80


>SB_10526| Best HMM Match : CUE (HMM E-Value=6.5)
          Length = 281

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 78  RPVNCNTTHYRANW 91


>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 54  RPVNCNTTHYRANW 67


>SB_4159| Best HMM Match : Vpu (HMM E-Value=2)
          Length = 779

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 14/14 (100%), Positives = 14/14 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRANW 480
           RPVNCNTTHYRANW
Sbjct: 78  RPVNCNTTHYRANW 91


>SB_49172| Best HMM Match : UCR_TM (HMM E-Value=9.8)
          Length = 142

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 17/19 (89%), Positives = 17/19 (89%)
 Frame = +3

Query: 465 GGARYPIRPIVSRITIHWP 521
           GGA  PIRPIVSRITIHWP
Sbjct: 36  GGA--PIRPIVSRITIHWP 52


>SB_51122| Best HMM Match : UCR_TM (HMM E-Value=5.5)
          Length = 131

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 16/19 (84%), Positives = 16/19 (84%)
 Frame = +3

Query: 465 GGARYPIRPIVSRITIHWP 521
           GGA  PIRPIVS ITIHWP
Sbjct: 38  GGA--PIRPIVSHITIHWP 54


>SB_1601| Best HMM Match : RuvB_C (HMM E-Value=3.6)
          Length = 237

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRAN 483
           RPVNCNTTHYRAN
Sbjct: 85  RPVNCNTTHYRAN 97


>SB_37618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 35.1 bits (77), Expect = 0.035
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -1

Query: 521 RPVNCNTTHYRAN 483
           RPVNCNTTHYRAN
Sbjct: 28  RPVNCNTTHYRAN 40


>SB_28728| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = +3

Query: 483 IRPIVSRITIHWP 521
           IRPIVSRITIHWP
Sbjct: 18  IRPIVSRITIHWP 30


>SB_28519| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = +3

Query: 483 IRPIVSRITIHW 518
           +RP+VSRITIHW
Sbjct: 33  LRPVVSRITIHW 44


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 1/20 (5%)
 Frame = +3

Query: 450 YRIPRGGARYPIR-PIVSRI 506
           YR PRGGARY +  P++SR+
Sbjct: 212 YRRPRGGARYQLLFPLISRL 231


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 491 RANWVPGPPSRNSIKSMSVPNDR 423
           R++W P PPSR S ++ + P+ R
Sbjct: 6   RSDWTPAPPSRRSDRTPAPPSRR 28


>SB_40521| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 126 IMLSTTNCLLYILQNVIIRFSCINFH 49
           ++    N  LY+LQ V +R++C  FH
Sbjct: 47  LLSGAVNMRLYLLQKVKLRYACNRFH 72


>SB_41446| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 90  LQNVIIRFSCINFH*TKCILVEI 22
           L+N+II F+CINF      L+E+
Sbjct: 205 LENIIIAFACINFFLPTLALLEL 227


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +1

Query: 334  DYRFVSLKIVSTIFRSLSQTYWPRDTKSICLSFG 435
            DY+F+++K      ++     W RD + +C S+G
Sbjct: 927  DYKFLAIKAELPTDKTSKHENWCRDYQMLCRSYG 960


>SB_34139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 49

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
 Frame = +3

Query: 384 VSNLLATGYQI--YLSIIWN*HRFYRIPRGGARYPI 485
           + + ++T  Q+  YL+  +  +R YR PRGGARY +
Sbjct: 11  IDDYISTSEQVVDYLTKFYQAYR-YRRPRGGARYQL 45


>SB_40655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1074

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 9/33 (27%), Positives = 21/33 (63%)
 Frame = -3

Query: 150 KTKNVYWHIMLSTTNCLLYILQNVIIRFSCINF 52
           +T N+ + I++ +  CLL +   ++I ++C+ F
Sbjct: 172 QTLNIKYCILIISKFCLLLVFHELLIGYACVYF 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,917,014
Number of Sequences: 59808
Number of extensions: 283516
Number of successful extensions: 644
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)