Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G08f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071052-1|AAL48674.1|  280|Drosophila melanogaster RE13893p pro...   120   2e-27
AE014297-438|AAF54138.1|  280|Drosophila melanogaster CG15188-PA...   120   2e-27
AY070617-1|AAL48088.1|  233|Drosophila melanogaster RE71995p pro...    34   0.13 
AE014297-421|AAF51900.1|  233|Drosophila melanogaster CG15592-PA...    34   0.13 
BT016007-1|AAV36892.1|  288|Drosophila melanogaster RE26656p pro...    33   0.18 
AE014297-419|AAF51902.1|  288|Drosophila melanogaster CG1153-PA ...    33   0.18 
X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase...    28   6.7  
AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p pro...    28   6.7  
AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA...    28   6.7  
AY118486-1|AAM49855.1|  174|Drosophila melanogaster HL08104p pro...    28   8.8  
AL133506-1|CAB65846.1|  387|Drosophila melanogaster EG:BACN33B1....    28   8.8  
AE014298-465|AAS65258.1|  387|Drosophila melanogaster CG32795-PC...    28   8.8  
AE014298-464|AAF45824.2|  387|Drosophila melanogaster CG32795-PB...    28   8.8  
AE014298-463|AAF45825.2|  387|Drosophila melanogaster CG32795-PA...    28   8.8  
AE013599-3584|AAF46989.2| 1395|Drosophila melanogaster CG13550-P...    28   8.8  

>AY071052-1|AAL48674.1|  280|Drosophila melanogaster RE13893p
           protein.
          Length = 280

 Score =  120 bits (288), Expect = 2e-27
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
 Frame = +3

Query: 36  CILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVISDCFEAGSPMACLKVKVLSYLDDK 215
           C LL   + + S +  +N +  PR+ +SD+L+ +++  CF A + M CLK KVL+YLD  
Sbjct: 13  CALLLVASTSVSGAAIENAVT-PRIHSSDELISTIVDKCFHANA-MHCLKEKVLTYLDTV 70

Query: 216 VGVGSE-SGRALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRGFDIEF 392
             V  E SGRAL +  IDKVI DR+ RIL+TNE + +LP+  F  + V+YR+DRGFD+E 
Sbjct: 71  ANVEEEVSGRALGDDVIDKVIVDRLGRILNTNEMRLQLPQTFFAGSVVTYRSDRGFDLEL 130

Query: 393 PENNENGEARGXXXXXXXXXXXXXXXXXXXAIMPILVSIIGIK 521
           P+  + G A                      IMPIL+++IG+K
Sbjct: 131 PK--DEGRAEKKNKDKLFLPLLLLMKFKLKVIMPILLALIGLK 171


>AE014297-438|AAF54138.1|  280|Drosophila melanogaster CG15188-PA
           protein.
          Length = 280

 Score =  120 bits (288), Expect = 2e-27
 Identities = 66/163 (40%), Positives = 96/163 (58%), Gaps = 1/163 (0%)
 Frame = +3

Query: 36  CILLASVAIATSYSIKDNEIELPRLRTSDDLLDSVISDCFEAGSPMACLKVKVLSYLDDK 215
           C LL   + + S +  +N +  PR+ +SD+L+ +++  CF A + M CLK KVL+YLD  
Sbjct: 13  CALLLVASTSVSGAAIENAVT-PRIHSSDELISTIVDKCFHANA-MHCLKEKVLTYLDTV 70

Query: 216 VGVGSE-SGRALDETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRGFDIEF 392
             V  E SGRAL +  IDKVI DR+ RIL+TNE + +LP+  F  + V+YR+DRGFD+E 
Sbjct: 71  ANVEEEVSGRALGDDVIDKVIVDRLGRILNTNEMRLQLPQTFFAGSVVTYRSDRGFDLEL 130

Query: 393 PENNENGEARGXXXXXXXXXXXXXXXXXXXAIMPILVSIIGIK 521
           P+  + G A                      IMPIL+++IG+K
Sbjct: 131 PK--DEGRAEKKNKDKLFLPLLLLMKFKLKVIMPILLALIGLK 171


>AY070617-1|AAL48088.1|  233|Drosophila melanogaster RE71995p
           protein.
          Length = 233

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 252 ETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRG 377
           E  +D ++ +RVAR   T+  +FK+P+   Q+ Q +    RG
Sbjct: 92  EAEVDSLLVERVARFFGTHTLQFKVPKDSIQDMQRALEESRG 133


>AE014297-421|AAF51900.1|  233|Drosophila melanogaster CG15592-PA
           protein.
          Length = 233

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 252 ETNIDKVIYDRVARILDTNEFKFKLPEFMFQNAQVSYRADRG 377
           E  +D ++ +RVAR   T+  +FK+P+   Q+ Q +    RG
Sbjct: 92  EAEVDSLLVERVARFFGTHTLQFKVPKDSIQDMQRALEESRG 133


>BT016007-1|AAV36892.1|  288|Drosophila melanogaster RE26656p
           protein.
          Length = 288

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 120 DDLLDSVISDCFEAGSPMACLKVKVLSYLDDKVG 221
           +D++DS+ SDC    S ++C+K K+ S++D  +G
Sbjct: 37  NDIMDSIYSDCLRKDS-VSCVKYKLFSFVDKVLG 69


>AE014297-419|AAF51902.1|  288|Drosophila melanogaster CG1153-PA
           protein.
          Length = 288

 Score = 33.5 bits (73), Expect = 0.18
 Identities = 13/34 (38%), Positives = 24/34 (70%)
 Frame = +3

Query: 120 DDLLDSVISDCFEAGSPMACLKVKVLSYLDDKVG 221
           +D++DS+ SDC    S ++C+K K+ S++D  +G
Sbjct: 37  NDIMDSIYSDCLRKDS-VSCVKYKLFSFVDKVLG 69


>X88928-1|CAA61369.1| 1092|Drosophila melanogaster DNA polymerase
            delta protein.
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 235  RGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRSLCSK 345
            +G H   +T   S + G  GF T   S L C+SL  K
Sbjct: 970  KGEHTRTRTVVTSKVGGLAGFMTKKTSCLGCKSLMPK 1006


>AY113526-1|AAM29531.1| 1092|Drosophila melanogaster RE60511p protein.
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 235  RGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRSLCSK 345
            +G H   +T   S + G  GF T   S L C+SL  K
Sbjct: 970  KGEHTRTRTVVTSKVGGLAGFMTKKTSCLGCKSLMPK 1006


>AE014296-2611|AAF49555.1| 1092|Drosophila melanogaster CG5949-PA
            protein.
          Length = 1092

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 235  RGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRSLCSK 345
            +G H   +T   S + G  GF T   S L C+SL  K
Sbjct: 970  KGEHTRTRTVVTSKVGGLAGFMTKKTSCLGCKSLMPK 1006


>AY118486-1|AAM49855.1|  174|Drosophila melanogaster HL08104p
           protein.
          Length = 174

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 GYG-RVMICWIVLSVIVSKPDRPWHAS 183
           GYG +    W +  +  S PD PWH S
Sbjct: 62  GYGYQAYNAWTLYKLAYSPPDAPWHVS 88


>AL133506-1|CAB65846.1|  387|Drosophila melanogaster EG:BACN33B1.2
           protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 GYG-RVMICWIVLSVIVSKPDRPWHAS 183
           GYG +    W +  +  S PD PWH S
Sbjct: 275 GYGYQAYNAWTLYKLAYSPPDAPWHVS 301


>AE014298-465|AAS65258.1|  387|Drosophila melanogaster CG32795-PC,
           isoform C protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 GYG-RVMICWIVLSVIVSKPDRPWHAS 183
           GYG +    W +  +  S PD PWH S
Sbjct: 275 GYGYQAYNAWTLYKLAYSPPDAPWHVS 301


>AE014298-464|AAF45824.2|  387|Drosophila melanogaster CG32795-PB,
           isoform B protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 GYG-RVMICWIVLSVIVSKPDRPWHAS 183
           GYG +    W +  +  S PD PWH S
Sbjct: 275 GYGYQAYNAWTLYKLAYSPPDAPWHVS 301


>AE014298-463|AAF45825.2|  387|Drosophila melanogaster CG32795-PA,
           isoform A protein.
          Length = 387

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 GYG-RVMICWIVLSVIVSKPDRPWHAS 183
           GYG +    W +  +  S PD PWH S
Sbjct: 275 GYGYQAYNAWTLYKLAYSPPDAPWHVS 301


>AE013599-3584|AAF46989.2| 1395|Drosophila melanogaster CG13550-PA
           protein.
          Length = 1395

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/68 (27%), Positives = 28/68 (41%)
 Frame = +3

Query: 60  IATSYSIKDNEIELPRLRTSDDLLDSVISDCFEAGSPMACLKVKVLSYLDDKVGVGSESG 239
           + + YSI   E   P L  SDD  D+   DC  A  P    K++  S    +        
Sbjct: 696 VESEYSI---EQMAPELSDSDDTFDNSEEDCRSADEPSNSKKIRNSSLFGSESESDESEE 752

Query: 240 RALDETNI 263
           RAL+  ++
Sbjct: 753 RALEADDL 760


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,068,767
Number of Sequences: 53049
Number of extensions: 460481
Number of successful extensions: 1458
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1452
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)