Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G08f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g07280.1 68414.m00774 expressed protein                             31   0.62 
At1g24706.1 68414.m03104 expressed protein                             29   1.9  
At1g30160.1 68414.m03687 expressed protein contains Pfam profile...    27   5.8  
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont...    27   7.7  

>At1g07280.1 68414.m00774 expressed protein
          Length = 552

 Score = 30.7 bits (66), Expect = 0.62
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 196 YHIWTTKSVLDRNRGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRSLCSKTRRSLTEPTG 375
           +H W    ++  +     T  +S  SS    R       SSL+CRS+    R + + P G
Sbjct: 11  FHQWVAHPIVHHSSSLSQTLASSAVSSPSRRRIIGNDGRSSLSCRSVMQSQRLNPSSPFG 70

Query: 376 DSILNSLRTTRTVKL 420
            S  N LR +++ +L
Sbjct: 71  TSSTN-LRHSKSCEL 84


>At1g24706.1 68414.m03104 expressed protein
          Length = 1781

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 401  QRER*SSRPLKEEAPASRPAALEAQDESYHADPG 502
            +RER  S PLKE+  AS+   L+ + +   A+PG
Sbjct: 1667 EREREKSLPLKEDFEASKRRKLKREQQVPSAEPG 1700


>At1g30160.1 68414.m03687 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 311

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 235 RGGHWTRQTSTKSSMIGWRGFWTPTNSSLNCRS 333
           R  HW    S +S ++ W   ++P N+S  C+S
Sbjct: 185 REDHWVESPSGESFLVKWFCEYSPENTSNWCKS 217


>At1g69545.1 68414.m07997 leucine-rich repeat family protein
           contains Pfam PF00560: Leucine Rich Repeat domains;
           similar to disease resistance protein RPP1-WsA
           (GI:3860163)[Arabidopsis thaliana]
          Length = 703

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 96  ELPRLRTSDDLLDSVISDC 152
           ELP L T+ +LL+ V+SDC
Sbjct: 11  ELPNLSTAINLLEMVLSDC 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,475,632
Number of Sequences: 28952
Number of extensions: 214542
Number of successful extensions: 633
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)