Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G07f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    27   2.2  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   3.0  
SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces...    25   6.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    25   9.0  
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos...    25   9.0  

>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 385 FQTWSKNILEISF*FTIVSNLK 320
           FQ+W+KNIL  S  F +VS LK
Sbjct: 88  FQSWNKNILTDSGGFQMVSLLK 109


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 2   IANGTLYMCASENFMLGFRLLLYC 73
           ++  T  +C + N++ GFR  LYC
Sbjct: 77  LSKSTFVICDALNYIKGFRYQLYC 100


>SPCC1393.06c |||rRNA processing protein Ipi1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 408

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 502 SSTLHITDNFIT*KTKLVSILVNQLSERLGT 410
           S   HIT +     TK +S+L+N   +RL +
Sbjct: 147 SGMTHITPSIRNDSTKFLSLLINACKDRLSS 177


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 327 LLTIVNQKEISRIFLDHVWN 386
           +L I  Q +++R  L+H+WN
Sbjct: 845 VLEIFGQSKLTRTELEHIWN 864


>SPCC306.04c |set1||histone lysine methyltransferase
           Set1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 920

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 157 ITFLNPLE*DSCFRASFTNFTGNCSISI 74
           ITF N  E  +C+RA    +  NC I +
Sbjct: 315 ITFNNYREASNCYRALDRTYVQNCRIKL 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,951,137
Number of Sequences: 5004
Number of extensions: 34790
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)