Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G07f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0442 - 17790811-17790889,17791047-17791114,17791144-177911...    29   1.7  
06_01_0165 + 1288107-1290476                                           29   2.3  
02_02_0206 - 7771835-7771913,7772083-7772219,7772364-7772422,777...    28   4.0  
02_02_0527 - 11191601-11192872                                         27   9.1  

>11_04_0442 - 17790811-17790889,17791047-17791114,17791144-17791166,
            17791210-17795913,17797414-17797624,17798478-17798666
          Length = 1757

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -2

Query: 508  LLSSTLHITDNFIT*KTKLVSILVNQLSERLGTHLDNLCK*FQTWSKNILEIS 350
            L +S LH+ D +     KL+      L  R G   ++ CK + TW  ++ E+S
Sbjct: 1376 LFTSHLHVLDKYYD--KKLLDYFSVFLGVRHGPSSEDYCKLWSTWESSVSELS 1426


>06_01_0165 + 1288107-1290476
          Length = 789

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 18/60 (30%), Positives = 32/60 (53%)
 Frame = +3

Query: 321 FKLLTIVNQKEISRIFLDHVWNYLQRLSKCVPSLSDNWFTRMETNFVFYVMKLSVMCNVD 500
           F L   +  KE+ +  ++++ N++   +     LS+ W T M+ N+  Y  KLS MC+ D
Sbjct: 529 FLLQPKIVPKEVKKSIMEYLMNHIDGHAP----LSNGWST-MQANYPEYHSKLSWMCHND 583


>02_02_0206 -
           7771835-7771913,7772083-7772219,7772364-7772422,
           7772535-7772610,7772717-7772873,7773241-7773329,
           7773648-7773750,7773919-7774013,7774301-7774367,
           7774894-7775066
          Length = 344

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 336 IVNQKEI-SRIF--LDHVWNYLQRLSKCVPSLSDNWFTRMETNFVF 464
           ++  KE+ S I+  L HV+ Y++  +  VPS +D W   M +++ F
Sbjct: 234 VLTHKEVFSSIYNTLRHVFKYVKAYTAHVPSFADTWGWVMASDYPF 279


>02_02_0527 - 11191601-11192872
          Length = 423

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +2

Query: 2   IANGTLYMCASENFMLGFRLLLYCY*N*TIACEVRE*CPET 124
           + NG LYM  +  ++LG  L+        +   VR+ CPE+
Sbjct: 249 LVNGKLYMLGTTGYILGLELVSMSLFFIEVPDAVRDDCPES 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,032,870
Number of Sequences: 37544
Number of extensions: 172525
Number of successful extensions: 348
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)