Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G07f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)           31   0.44 
SB_55785| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  30   1.0  
SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_47832| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  30   1.0  
SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)               30   1.0  
SB_33044| Best HMM Match : TAFH (HMM E-Value=2.6)                      30   1.0  
SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5)                      30   1.0  
SB_19945| Best HMM Match : TAFH (HMM E-Value=2.8)                      30   1.0  
SB_40198| Best HMM Match : Peptidase_C54 (HMM E-Value=3.7)             30   1.0  
SB_30459| Best HMM Match : GIY-YIG (HMM E-Value=0.56)                  30   1.0  
SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.0  
SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)             30   1.0  
SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8)                       30   1.0  
SB_1915| Best HMM Match : TAFH (HMM E-Value=4.4)                       30   1.3  
SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)                   28   5.4  
SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)                     27   7.1  
SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  
SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1)                      27   9.4  
SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)                   27   9.4  

>SB_25603| Best HMM Match : Ion_trans_2 (HMM E-Value=4.1e-35)
          Length = 587

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKFS +H Y NVPF
Sbjct: 56  YLNNLHPTIKFSSSHSYNNVPF 77


>SB_55785| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 447

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 136 YLNNLHPTIKFTSSHSYNNVPF 157


>SB_53153| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 56  YLNNLHPTIKFTSSHSYNNVPF 77


>SB_47832| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 56  YLNNLHPTIKFTSSHSYNNVPF 77


>SB_47703| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 640

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 298 YLNNLHPTIKFTSSHSYNNVPF 319


>SB_46172| Best HMM Match : Peptidase_C54 (HMM E-Value=1)
          Length = 417

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 255 YLNNLHPTIKFTSSHSYNNVPF 276


>SB_33044| Best HMM Match : TAFH (HMM E-Value=2.6)
          Length = 201

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 56  YLNNLHPTIKFTSSHSYKNVPF 77


>SB_22822| Best HMM Match : TAFH (HMM E-Value=2.5)
          Length = 342

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 115 YLNNLHPTIKFTSSHSYNNVPF 136


>SB_19945| Best HMM Match : TAFH (HMM E-Value=2.8)
          Length = 250

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69 YNSNLKPSIKFSDAHMY-NVPF 7
          Y +NL P+IKF+ +H Y NVPF
Sbjct: 21 YLNNLHPTIKFTSSHSYNNVPF 42


>SB_40198| Best HMM Match : Peptidase_C54 (HMM E-Value=3.7)
          Length = 221

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 125 YLNNLHPTIKFTSSHSYNNVPF 146


>SB_30459| Best HMM Match : GIY-YIG (HMM E-Value=0.56)
          Length = 347

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 56  YLNNLHPTIKFTSSHSYNNVPF 77


>SB_27380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 302 YLNNLHPTIKFTSSHSYNNVPF 323


>SB_18427| Best HMM Match : Peptidase_C54 (HMM E-Value=1.3)
          Length = 535

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 387 YLNNLHPTIKFTSSHSYNNVPF 408


>SB_3597| Best HMM Match : TAFH (HMM E-Value=3.8)
          Length = 283

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 13/22 (59%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y +NL P+IKF+ +H Y NVPF
Sbjct: 56  YLNNLHPTIKFTSSHSYNNVPF 77


>SB_1915| Best HMM Match : TAFH (HMM E-Value=4.4)
          Length = 218

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69  YNSNLKPSIKFSDAHMY-NVPF 7
           Y  NL P+IKF+ +H Y NVPF
Sbjct: 56  YLDNLHPTIKFTSSHSYNNVPF 77


>SB_25441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 26/78 (33%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
 Frame = +3

Query: 294 SPIPLLTSLFKLLTIVNQKEISRIFLDHVWNYLQRLSKCVPSLSDNWFTRMETNFVFY-- 467
           SP P+LTS   LL    Q+E     L H+  YL  + +C+   S  +     T  +F   
Sbjct: 497 SPDPVLTSCGVLLLSAQQQEKFVFILSHLM-YLLCILRCI--FSSAFLNVGHTLAMFLRR 553

Query: 468 -VMKLSVMCNVDESKKDV 518
            V  L V  NVDE   D+
Sbjct: 554 TVRGLPVQLNVDELTADI 571


>SB_25259| Best HMM Match : PhdYeFM (HMM E-Value=6.6)
          Length = 393

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 209 FVFS*ELNKSKMHCHRFCSKSFTNTES 289
           FVF+  L+K ++HCH     S   TE+
Sbjct: 60  FVFNNHLSKEEIHCHAVICDSVVRTEA 86


>SB_40043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/34 (32%), Positives = 20/34 (58%)
 Frame = +1

Query: 388 ICKDYLNVFLVFQIIGSLEWKLILFFTL*NYLLC 489
           +CK Y  + L+ +++GSL W L    T+ + + C
Sbjct: 499 VCK-YTWIILIAKLLGSLRWTLAKLLTVLSMIFC 531


>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
          Length = 715

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 391 CKDYLNVFLVFQIIGSLEWKLILFFTL 471
           CKD   V L   ++G +E  +I F+TL
Sbjct: 183 CKDNATVTLAEDVLGDIEESMIAFYTL 209


>SB_41088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 15/74 (20%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
 Frame = +3

Query: 273 LPILKVASPIPLLTSLFKLLTIVNQKEISRIFLDHVWNYLQRLSKCVPSLSDNWFTRME- 449
           L +L  + P+P + + + +LT++ Q  +  I L ++  + +RL+    ++  N  ++ E 
Sbjct: 516 LTVLSKSRPLPNIFNFYTILTVLGQFAVHFIALVYMVGHAKRLTPSSSAVHVNLESKFEP 575

Query: 450 --TNFVFYVMKLSV 485
              N   Y++ +++
Sbjct: 576 TILNSTVYIISVAL 589


>SB_29147| Best HMM Match : TAFH (HMM E-Value=4.1)
          Length = 249

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -3

Query: 69 YNSNLKPSIKFSDAHMY-NVPF 7
          Y +NL  +IKF+ +H Y NVPF
Sbjct: 22 YLNNLHANIKFTSSHSYNNVPF 43


>SB_3786| Best HMM Match : THAP (HMM E-Value=7.5e-07)
          Length = 807

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 17/59 (28%), Positives = 29/59 (49%)
 Frame = +2

Query: 224 ELNKSKMHCHRFCSKSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCLELFAKI 400
           +L+K K +C R  SK+     S  S   A +TF +  N   ++++     PCL + A +
Sbjct: 283 DLDKLKCNCKRH-SKTCGCMSSNFSRMPALITFAVCSNVVLQKSMLEGCGPCLPIIASM 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,572,760
Number of Sequences: 59808
Number of extensions: 222369
Number of successful extensions: 582
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)