Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G07f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z81557-6|CAB04529.1|  357|Caenorhabditis elegans Hypothetical
           protein F59A1.12 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
 Frame = +3

Query: 219 VKNLISLKCTVIDSAQKVLPILKVASPIPLLTSLFKLLTIVNQKEISRIFLDHVWNYLQR 398
           +  ++SL   +I     +L +L +A+ I  +    KL+ + +   I     + V N +Q 
Sbjct: 33  LNRVVSLTTCIILHIHIILRLL-IANKIRQMNDYQKLIIVQSIINILACSFEMVLNEIQT 91

Query: 399 LSKCVPSLSDNW--FTRMETNFVFYVMKLSVMCN 494
            +     +  +W  FTR ET  +FY + + V  N
Sbjct: 92  SNINYVKIGHSWWHFTRFET--IFYTISMVVTSN 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,623,543
Number of Sequences: 27780
Number of extensions: 188423
Number of successful extensions: 537
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)