Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G07f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.9  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   3.3  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   5.8  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 287 SCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           +C      D+TF IT   ++     NI+ PC+
Sbjct: 225 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +2

Query: 287 SCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           +C      D+TF IT   ++     NI+ PC+
Sbjct: 225 TCCDEPYLDITFNITMRRKTLFYTVNIIIPCM 256


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 290 CISHTSADVTFQITDNSESKRNL*NILRPCL 382
           C +   +D+TF IT   ++     N++ PC+
Sbjct: 231 CCTEPYSDITFNITMRRKTLFYTVNLIIPCV 261


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 168 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 206


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 236 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 274


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = +2

Query: 266 KSFTNTESCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           K  T T  C      DVTF I     +     N++ PC+
Sbjct: 236 KKNTITYQCCPEPYVDVTFTIQIRRRTLYYFFNLIVPCV 274


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 287 SCISHTSADVTFQITDNSESKRNL*NILRPCL 382
           +C      D+TF IT   ++     N++ PC+
Sbjct: 221 TCCDEPYLDITFNITMRRKTLFYTVNLIIPCM 252


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 63  CYTVIEIEQLPV 98
           CY +  IEQ+PV
Sbjct: 103 CYNINHIEQIPV 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,144
Number of Sequences: 438
Number of extensions: 2155
Number of successful extensions: 35
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)