Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    27   2.2  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    26   3.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   5.2  
SPBC3B9.03 |||signal recognition particle receptor alpha subunit...    25   6.8  
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat...    25   9.0  

>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 307 KFNITPLEACENAHIFCMNSITM 375
           +FN T L  C+N H++   S+TM
Sbjct: 601 QFNNTSLATCDNGHVWRRCSVTM 623


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +1

Query: 235 IKRQHPNIDKLSHDQLKYTIQILNKFNI-TPLEACENA-HIFCMNSI 369
           +KR   N  +  HD+L YTI   N+  + T  E  ENA  ++ ++S+
Sbjct: 317 LKRFKYNETQEGHDKLFYTIVFTNEMRLFTTTEDAENAERMYYLSSV 363


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
 Frame = +1

Query: 124 VFNSNLKKLTRRYSNFPFLDLHQQIT------GQNLSSTCLEKIKRQHPNIDKLSHDQLK 285
           V+N  + KL + + +F  L+L + +        +N +   LEK+      ID      LK
Sbjct: 596 VYNEGIVKLNKDFDDFTPLNLLKCVNYSLMEFQKNSTFDMLEKLYEIGREIDMSKFSTLK 655

Query: 286 YTIQILN 306
           Y +Q+ N
Sbjct: 656 YNLQLPN 662


>SPBC3B9.03 |||signal recognition particle receptor alpha subunit
           Srp101|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 8/18 (44%), Positives = 16/18 (88%)
 Frame = +1

Query: 73  QAMGIYVRNLLNLRGSSV 126
           + +G++V+NL +L+GSS+
Sbjct: 387 EQLGVHVKNLQSLKGSSI 404


>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
           subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 308

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = +1

Query: 91  VRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKI-KRQHPNIDKL 267
           ++ L++  G   ++  +            L+LH+Q     L         ++ H +IDK+
Sbjct: 188 IQALIHGLGRHYYSLRINYKKTELEEIMLLNLHKQPWAHGLLLENFNSAAEKNHASIDKM 247

Query: 268 SHDQLKYTIQILNKFNITP 324
                +YT ++ N+  ++P
Sbjct: 248 KSLSEQYTERVQNEVTLSP 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,127,505
Number of Sequences: 5004
Number of extensions: 42615
Number of successful extensions: 88
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)