Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040           33   0.11 
07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629...    30   1.3  
02_02_0179 + 7500647-7500779,7503021-7503222,7503356-7503427,750...    30   1.3  
01_06_0230 + 27718840-27720188,27720983-27721174,27721488-277215...    28   4.0  

>10_02_0005 - 4065845-4065970,4067856-4067913,4067982-4068040
          Length = 80

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 241 RQHPNIDKLSHDQLKYTIQILNKFNITPLEACENA-HIFCMN 363
           R HPN D   HD  +   Q   +F   PL+  ++  H+ C+N
Sbjct: 5   RTHPNSDTYQHDSQESCTQAAARFGFLPLDQMQSKWHVICIN 46


>07_03_1166 -
           24461881-24462013,24462255-24462643,24462877-24462948,
           24463718-24463887,24464232-24464362,24464744-24464860,
           24464969-24465351,24465582-24465764
          Length = 525

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 259 DKLSHDQLKYTIQILNKFNITPLEACENAHIFCMN 363
           D+ SH+ LK+   +L    +  +E   +AH+FCM+
Sbjct: 411 DEPSHNSLKFLQALLGSVPLVHVEDACDAHVFCMD 445



 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 259 DKLSHDQLKYTIQILNKFNITPLEACENAHIFCMN 363
           D+L H+ LK+   +L    +  ++   +AH+FCM+
Sbjct: 118 DELCHNVLKFLQALLGSVPLVHIDDVCDAHVFCMD 152


>02_02_0179 +
           7500647-7500779,7503021-7503222,7503356-7503427,
           7503655-7503726,7504212-7504283,7504711-7504782,
           7505045-7505116,7505209-7505280,7505688-7505759,
           7506215-7506292,7506670-7506729,7506810-7506848,
           7506949-7506998,7507110-7507480,7508467-7508662,
           7508856-7508936,7509694-7509848,7510302-7510512,
           7510648-7510882,7510995-7511145,7511813-7512181
          Length = 944

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 172 PFLDLHQQITGQNLSSTCLEKIKRQHP-NIDKLSHDQLKYTIQILNKFNITPLEACENAH 348
           P+L   Q +   +LS     K+  Q P N D++   QL+Y     N F   P   C+ A+
Sbjct: 269 PYLGQMQYLILMDLS---FNKLTGQIPQNFDRMVALQLQYLDVSFNNFTGNPPNECQQAN 325

Query: 349 IFCMNSITMDNYGEILREC 405
           +  ++S +  N   +L+ C
Sbjct: 326 VNMVSSFSSSN-DNLLQPC 343


>01_06_0230 + 27718840-27720188,27720983-27721174,27721488-27721569,
            27721651-27721839,27721964-27722077,27722470-27722560,
            27722632-27722789,27723401-27723826,27724355-27724727,
            27725075-27725238
          Length = 1045

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = +1

Query: 97   NLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKIKRQHPNIDKLSHD 276
            NLLN  G  +    + KL    +N      H     QN+ S+C E +     +++K S D
Sbjct: 928  NLLNRNGDRLKEDIIIKLLHELNNLVSSSGHSDSLYQNIISSCTEFLS-VSTSVEKASSD 986

Query: 277  Q 279
            Q
Sbjct: 987  Q 987


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,502,042
Number of Sequences: 37544
Number of extensions: 225923
Number of successful extensions: 372
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)