Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)         29   1.8  
SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                 29   2.3  
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)                 28   4.1  
SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.1  

>SB_48254| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00076)
          Length = 1414

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/51 (25%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +1

Query: 205  QNLSSTCLEKIKRQHPNIDKLSHDQLKYTIQILNKFNITPL-EACENAHIF 354
            +NL  TC+ +  ++  ++  +S  + ++  Q+L+ +N+T + + CEN + F
Sbjct: 1024 KNLKETCVGRWWKEIKSLAGVSKKESRWYSQLLDAYNVTTVAQLCENINDF 1074


>SB_57129| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 456

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/100 (20%), Positives = 40/100 (40%)
 Frame = +1

Query: 94  RNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKIKRQHPNIDKLSH 273
           RNLLNL G+   +  L  +    ++   LDL  Q  G   S    + I+ +H  +     
Sbjct: 144 RNLLNLIGACTDSEKLMIIVEFANDGCLLDLLHQARGDLQSPRIYQNIEPRHSEVVLGQT 203

Query: 274 DQLKYTIQILNKFNITPLEACENAHIFCMNSITMDNYGEI 393
            +L+  + +    +    + C +  +   N +  D   ++
Sbjct: 204 RRLEIALDVAQGMDYLASKRCVHRDLAARNVLIADGVAKV 243


>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4232

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +1

Query: 115  GSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKIKRQHPNIDKLSHDQLKYTI 294
            GS +F S   K+     N      + ++  +NL  TC+ +  ++  ++  +S  + ++  
Sbjct: 3692 GSPLFKSVRNKVLLTVKNSKRAFYNNKV--KNLKETCVGRWWKEIKSLAGVSEKKSRWYS 3749

Query: 295  QILNKFNITPL-EACENAHIF 354
            Q+L+  N+T + + CEN + F
Sbjct: 3750 QLLDADNVTTVAQLCENINDF 3770


>SB_28962| Best HMM Match : F-box (HMM E-Value=6.3e-10)
          Length = 447

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 145 KLTRRYSNFPFLDLHQQITGQNLSSTCLEKIKRQHPNI 258
           K T +YS+   LDL        LS+ CLE + RQ PN+
Sbjct: 278 KPTAKYSSLETLDLRWNFL---LSAECLEGLLRQAPNL 312


>SB_22759| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +3

Query: 408 IHQNYNQTHYQISHSCKIQDNRXI--KKGWFDQSRSKSRK 521
           I ++   TH Q  H+C++ DNR I   K W     SKS K
Sbjct: 409 IIRDQQSTHVQ--HTCEVCDNRVIIGDKNWASHLVSKSHK 446


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,989,502
Number of Sequences: 59808
Number of extensions: 295988
Number of successful extensions: 597
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 596
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)