Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF transcr...    31   0.72 
BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p pro...    31   1.3  
AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA...    31   1.3  
AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.      31   1.3  

>AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF
           transcription factor protein.
          Length = 709

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  PQQTQAMG-IYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKI 237
           P    A+G I   ++  L  S +++  +K +  RY  FP  D ++ IT QN+      K+
Sbjct: 6   PASPVAIGEIKYEDVSQLNFSKLYSPKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKV 65

Query: 238 KRQHPNIDKL 267
              H N   L
Sbjct: 66  LTNHGNTTNL 75


>BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  PQQTQAMG-IYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKI 237
           P    A+G +   ++  L  S +++  +K +  RY  FP  D ++ IT QN+      K+
Sbjct: 6   PASPVAIGELKYEDVSQLNFSKLYSPKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKV 65

Query: 238 KRQHPNIDKL 267
              H N   L
Sbjct: 66  LTNHGNTTNL 75


>AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA
           protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  PQQTQAMG-IYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKI 237
           P    A+G +   ++  L  S +++  +K +  RY  FP  D ++ IT QN+      K+
Sbjct: 6   PASPVAIGELKYEDVSQLNFSKLYSPKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKV 65

Query: 238 KRQHPNIDKL 267
              H N   L
Sbjct: 66  LTNHGNTTNL 75


>AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 61  PQQTQAMG-IYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTCLEKI 237
           P    A+G +   ++  L  S +++  +K +  RY  FP  D ++ IT QN+      K+
Sbjct: 6   PASPVAIGELKYEDVSQLNFSKLYSPKMKSVYWRYFGFPSNDNNEVITKQNVVCIKCHKV 65

Query: 238 KRQHPNIDKL 267
              H N   L
Sbjct: 66  LTNHGNTTNL 75


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,871,314
Number of Sequences: 53049
Number of extensions: 427594
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 24,988,368
effective HSP length: 80
effective length of database: 20,744,448
effective search space used: 1929233664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)