Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.      34   0.071
AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective mei...    34   0.071
Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical pr...    28   3.5  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defecti...    27   6.2  
AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z71178-8|CAA94882.1|  552|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>AF248052-1|AAF62184.1|  280|Caenorhabditis elegans MEI-2 protein.
          Length = 280

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +1

Query: 232 KIKRQHPNIDK-LSHD-QLKYT-IQILNKFNITPLEACENAHIFCMNSITMDNYGE 390
           K+K    N+++ LS+D QL  T I+ILN  N   L +C     F M +IT DNYG+
Sbjct: 139 KMKSFTSNMEQILSNDNQLAPTVIRILNSRNSWCLNSCHACLTFIMENITSDNYGK 194


>AF039713-9|AAB96729.1|  280|Caenorhabditis elegans Defective
           meiosis protein 2 protein.
          Length = 280

 Score = 33.9 bits (74), Expect = 0.071
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +1

Query: 232 KIKRQHPNIDK-LSHD-QLKYT-IQILNKFNITPLEACENAHIFCMNSITMDNYGE 390
           K+K    N+++ LS+D QL  T I+ILN  N   L +C     F M +IT DNYG+
Sbjct: 139 KMKSFTSNMEQILSNDNQLAPTVIRILNSRNSWCLNSCHACLTFIMENITSDNYGK 194


>Z81519-5|CAI46603.1|  590|Caenorhabditis elegans Hypothetical
           protein F29C12.1b protein.
          Length = 590

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +1

Query: 121 SVFNSNLKKLTRRYSNFPFLDLHQQITGQ-----NLSSTCLEKIKRQHPNIDKLSHDQLK 285
           ++FN N   LT        L   QQ  GQ     N +S    + + Q P I +L   Q +
Sbjct: 278 NLFNLNANPLTVNQQGISTLQTQQQQYGQVQHQGNYNSQNYNQQQPQQPQIPQLPQQQQQ 337

Query: 286 YTIQILNKFN 315
           Y  Q   +FN
Sbjct: 338 YNQQYNQQFN 347


>Z81519-4|CAB04218.1|  592|Caenorhabditis elegans Hypothetical
           protein F29C12.1a protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +1

Query: 121 SVFNSNLKKLTRRYSNFPFLDLHQQITGQ-----NLSSTCLEKIKRQHPNIDKLSHDQLK 285
           ++FN N   LT        L   QQ  GQ     N +S    + + Q P I +L   Q +
Sbjct: 280 NLFNLNANPLTVNQQGISTLQTQQQQYGQVQHQGNYNSQNYNQQQPQQPQIPQLPQQQQQ 339

Query: 286 YTIQILNKFN 315
           Y  Q   +FN
Sbjct: 340 YNQQYNQQFN 349


>U55370-2|AAA97994.1|  561|Caenorhabditis elegans Hypothetical
           protein K03B4.6 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 223 CLEKIKRQHPNIDKLSHDQLKYTIQILNKFNITPLEACENAHIFCMNSITMDNYGE 390
           CL K+++ +PN+ K + +   + IQ     NIT L+    A  +CM  I   + GE
Sbjct: 242 CLSKLRKTNPNLSKYTCE--NFDIQTK---NITTLKRIFTADKWCMEWIMRKHCGE 292


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  YH*FNELKKSVHSKHRPWGFT*G 97
           +H  NE+++S  S HRPW  T G
Sbjct: 264 FHGGNEIRRSPTSTHRPWTSTRG 286


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 29  YH*FNELKKSVHSKHRPWGFT*G 97
           +H  NE+++S  S HRPW  T G
Sbjct: 264 FHGGNEIRRSPTSTHRPWTSTRG 286


>U80446-1|AAB37802.2| 1198|Caenorhabditis elegans Spindle defective
           protein 5 protein.
          Length = 1198

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +1

Query: 226 LEKIKRQHPNIDKLSHDQLKYTIQILNKFNITP-LEACE-NAHIFCMN 363
           LE++    PN DK+   +L +   I +K N++  LEA E + H   +N
Sbjct: 604 LERMGSSDPNADKIKKMKLAFETSINDKLNVSAILEAAEKDLHNMSLN 651


>AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical
           protein M151.5 protein.
          Length = 456

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 18/50 (36%), Positives = 31/50 (62%)
 Frame = +1

Query: 67  QTQAMGIYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLS 216
           ++    IY+RNL  +RGS+V  +NL  +T   S F FL+ + Q + ++L+
Sbjct: 331 ESMPASIYIRNLKMVRGSNVTLNNL--ITSNCSQF-FLE-NSQFSSKDLN 376


>Z71178-8|CAA94882.1|  552|Caenorhabditis elegans Hypothetical
           protein B0024.10 protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = +1

Query: 64  QQTQAMGIYVRNLLNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQIT 201
           +Q+  + +++ N+L   G  +  +NLK +T    NF  ++L  + T
Sbjct: 422 EQSSNLDLFLNNVLTRSGWKLMFTNLKVVTNELKNFVDIELAPKST 467


>Z68008-5|CAD91696.1| 1160|Caenorhabditis elegans Hypothetical
           protein R08B4.1b protein.
          Length = 1160

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 390 NFKRMSIHQNYN-QTHYQISHSCKIQDN 470
           +F+ +   +N+   THY  +HSC++ DN
Sbjct: 99  SFETIVSRENFAISTHYHGTHSCRVHDN 126


>Z68008-4|CAA92000.4| 1137|Caenorhabditis elegans Hypothetical
           protein R08B4.1a protein.
          Length = 1137

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 390 NFKRMSIHQNYN-QTHYQISHSCKIQDN 470
           +F+ +   +N+   THY  +HSC++ DN
Sbjct: 99  SFETIVSRENFAISTHYHGTHSCRVHDN 126


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,651,548
Number of Sequences: 27780
Number of extensions: 235201
Number of successful extensions: 579
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 579
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)