Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G06f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein lo...    29   1.9  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    28   4.4  

>At2g19240.1 68415.m02246 RabGAP/TBC domain-containing protein low
           similarity to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 840

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +1

Query: 58  CPQQTQAMGIYVRNLLNLRGSSVFNSNLKKLTRRYSNFP-FLDLHQQI 198
           CP+ T  +G+ V  +L LR S +   N     +R  NFP  +DL++ I
Sbjct: 375 CPRGTLVLGMTVSMILYLRSSLLSTENATCCLQRLLNFPENIDLNKII 422


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 103 LNLRGSSVFNSNLKKLTRRYSNFPFLDLHQQITGQNLSSTC----LEKIKRQHPNIDKLS 270
           +++ G  V  S  + + R +   P++ L  +   Q L ++C    L  IK    ++  +S
Sbjct: 174 VDVNGFQVLPSQAESVKRIFERHPYMALEFRAKNQQLRASCINVLLSLIKTLCQSLQDIS 233

Query: 271 HDQLKYTIQIL 303
            D L  T Q+L
Sbjct: 234 IDDLGQTEQVL 244


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,708,036
Number of Sequences: 28952
Number of extensions: 205656
Number of successful extensions: 391
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)