Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G05f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar...    29   0.56 
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    25   6.8  
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo...    25   9.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC13G7.06 |met16||phosphoadenosine phosphosulfate reductase|Sc...    25   9.0  

>SPAC13F5.06c |sec10||exocyst complex subunit
           Sec10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = +1

Query: 109 TKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN--GALDEVFKKYCDKSAQ 282
           T+N+   K+  ++ ++++F  CL    +LN LK+ + +   +   A  +V  +Y  KS  
Sbjct: 40  TQNDGSKKLSSIDGSIKSFAACLH---ELNRLKSRVGDRIRDYASASKQVQNEYHQKSNH 96

Query: 283 LKGCISSVLQ 312
           L+   + VL+
Sbjct: 97  LREKFAQVLE 106


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +1

Query: 280 QLKGCISSVLQGVRPCVG---NDYANHINDAQNSTNQLIDFVCYKD 408
           +L   I+  L  ++P +    N Y  HI  +  +  +L  F CYK+
Sbjct: 53  KLTKAITEYLSNLKPQLSKQENIYVKHIKSSNEAKTELEIFNCYKE 98


>SPAC1952.05 |gcn5||histone acetyltransferase
           Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 454

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 331 GNDYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEG 441
           G+   NH+ D    T  +  F+ Y D   I  F  +G
Sbjct: 207 GSHLMNHLKDYVRGTTTIQHFLTYADNYAIGYFKKQG 243


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 334 NDYANHINDAQNSTNQLIDFVCYKDGD 414
           ++Y N + D + + N++++   YKD D
Sbjct: 569 DEYRNKLKDKEETYNEVMNAFQYKDND 595


>SPAC13G7.06 |met16||phosphoadenosine phosphosulfate
          reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 266

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 71 SSANTPAAKIVIKTVFH 21
          SS +TPA K+  KT+FH
Sbjct: 2  SSIDTPANKLQAKTLFH 18


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,997
Number of Sequences: 5004
Number of extensions: 37647
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)