Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G05f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 30 1.3
03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006... 29 1.7
06_03_0592 + 22585546-22588573,22588680-22589032 29 3.0
10_08_0429 + 17845303-17845431,17845508-17845684,17845782-178458... 28 5.2
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 28 5.2
12_01_0394 - 3105306-3106596,3107815-3107861 27 9.1
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 27 9.1
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332... 27 9.1
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 214 IEEAKPNGALDEVF-KKYCDKSAQLKGCISSVLQGVRPCVGNDYANHINDAQNSTNQLID 390
I+ A P+G + F KK + Q +S ++Q + DY N+A+ +TN L+D
Sbjct: 421 IDNASPSGFNTQAFLKKRSRATNQPVESMSMIMQFIETQGFLDYLERCNNAEENTNNLLD 480
>03_06_0476 +
34199577-34199638,34200267-34200397,34200535-34200698,
34201007-34201117,34201308-34201387,34201489-34201639,
34201736-34201829,34202421-34202509,34203672-34203745,
34203859-34204021,34204445-34204530,34205011-34205094,
34205186-34205366,34205837-34205887
Length = 506
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Frame = +1
Query: 73 FSQITAVVTSQCTKNNA---ED---KVPEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 234
FSQ T V+ +Q + + +D K V A R++G L GLV ++V + + E+KP+
Sbjct: 109 FSQFTVVIATQLPERSLLKLDDICRKANIVLVAARSYG--LTGLVRISVKEHNVIESKPD 166
Query: 235 GALDEV 252
LD++
Sbjct: 167 HFLDDL 172
>06_03_0592 + 22585546-22588573,22588680-22589032
Length = 1126
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +1
Query: 10 VTMMWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLV 189
VT+ + + F G+ F ++ ++ ++NN K+P+ F N L L
Sbjct: 656 VTLEYLEIQSNFFVGGI-PQSFMKLVSIKEMDISRNNLSGKIPQ-------FLNLLSSLH 707
Query: 190 DLNVLKTEIEEAKPNGALDEV 252
DLN+ + P G + ++
Sbjct: 708 DLNLSFNNFDGVIPTGGVFDI 728
>10_08_0429 +
17845303-17845431,17845508-17845684,17845782-17845895,
17846386-17846520,17847659-17847790,17847919-17848071,
17848574-17848709,17849338-17849443,17849538-17849730,
17849803-17849963,17850227-17850442,17850732-17850997,
17851505-17851779,17851871-17852327,17853973-17854055,
17854260-17854469,17854897-17855373,17855462-17855743,
17855910-17856236,17856418-17856507,17856788-17856899,
17857004-17857104,17857524-17857568
Length = 1458
Score = 27.9 bits (59), Expect = 5.2
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 352 INDAQNST--NQLIDFVCYKDGDRIALFIAEGGPECFQQKTENLKTCFLI*NR 504
I+D++N T IDF+C ++G+ A F+ PE + FLI N+
Sbjct: 661 IHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPSKMDLFLIPNK 713
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 61 LADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVD 192
+AD QI+A V + T A + V+ A ++G+C+ L +
Sbjct: 1320 MADSNGQISAAVMERLTSAAAAEPYESVKHAFVSYGSCIADLAE 1363
>12_01_0394 - 3105306-3106596,3107815-3107861
Length = 445
Score = 27.1 bits (57), Expect = 9.1
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Frame = +1
Query: 94 VTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLNVLKTE------IEEAK-PNGALDEV 252
++ +C++++ D V E + R C++G + NVL E +E K NG + +
Sbjct: 284 ISDECSEHSTVDHVNEFKLVKRKLEGCIQGRIP-NVLGREEDDIGNVESTKGRNGQMGKK 342
Query: 253 FKKYCDKSAQLKGCISS 303
KK D S + + S+
Sbjct: 343 HKKNLDVSEESRHLASN 359
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 145 EAALRTFGNCLKGLV-DLNVLKTEIEEAKPNGAL--DEVFKKYCDKSAQLK 288
EAA + F + + DL LKT++EE K N L E +KY A++K
Sbjct: 196 EAAAKAFDTQNEEITKDLEDLKTKLEEIKTNKDLVESENEEKYSQSEAEIK 246
>01_01_0447 -
3327727-3328144,3328438-3328688,3328820-3328909,
3329061-3329159,3329240-3329353,3329450-3329555,
3329661-3329740,3329913-3330173,3330271-3330507,
3330635-3330922
Length = 647
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 352 INDAQNSTNQLIDFVCYKDGDRIALFIA 435
I +A N ++QL+DF+ +G +I ++ A
Sbjct: 265 ICEASNKSSQLVDFLVQNNGKKIMVYFA 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,709
Number of Sequences: 37544
Number of extensions: 262236
Number of successful extensions: 645
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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