Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G05f
(521 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 30 0.87
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 30 0.87
L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical pr... 30 0.87
L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical pr... 30 0.87
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 30 0.87
Z99280-1|CAB16499.1| 225|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical ... 28 4.7
AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical ... 27 6.2
U40029-7|AAA81127.1| 645|Caenorhabditis elegans Yeast scc (mito... 27 8.1
AC006708-1|AAL77186.1| 129|Caenorhabditis elegans Hypothetical ... 27 8.1
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 337 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 444
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical
protein ZK520.3a protein.
Length = 1383
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 337 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 444
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>L23647-8|AAK29993.1| 54|Caenorhabditis elegans Hypothetical
protein ZC262.5 protein.
Length = 54
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 49 AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 162
AAG+ +SQI A V QCTK A K P +A L+T
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41
>L07144-2|AAK21439.1| 54|Caenorhabditis elegans Hypothetical
protein R05D3.6 protein.
Length = 54
Score = 30.3 bits (65), Expect = 0.87
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 49 AAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRT 162
AAG+ +SQI A V QCTK A K P +A L+T
Sbjct: 6 AAGLNYVRYSQIAAQVVRQCTKGGANVKKP--QATLKT 41
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 30.3 bits (65), Expect = 0.87
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +1
Query: 337 DYANHINDAQNSTNQLIDFVCYKDGDRIALFIAEGG 444
D ++ DA N T +LID K+GD +A+ +A G
Sbjct: 62 DKKGNVIDALNPTGKLIDIAWDKEGDVLAIAVANTG 97
>Z99280-1|CAB16499.1| 225|Caenorhabditis elegans Hypothetical
protein Y57G11B.5 protein.
Length = 225
Score = 28.7 bits (61), Expect = 2.7
Identities = 21/90 (23%), Positives = 37/90 (41%)
Frame = +1
Query: 19 MWKTVLITIFAAGVLADDFSQITAVVTSQCTKNNAEDKVPEVEAALRTFGNCLKGLVDLN 198
M+K+++ + A +A S +T + AED P A R F C K + + +
Sbjct: 1 MFKSLVFSALLAYAVAAPMSSMTTAIDRIDQIFQAEDSTPACNAETRRFNACFKDINEKS 60
Query: 199 VLKTEIEEAKPNGALDEVFKKYCDKSAQLK 288
L+ ++ + EV + D LK
Sbjct: 61 RLEM-FQDVTKFPSKSEVLESVADIRKALK 89
>AC084153-7|AAK84593.1| 451|Caenorhabditis elegans Hypothetical
protein Y22D7AL.4 protein.
Length = 451
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +1
Query: 136 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPN 234
PE E +RT G+ G++D+N + + A+PN
Sbjct: 64 PEFEVEIRTNGHIYAGILDINGAEPGDKGAEPN 96
>AF016427-2|AAB65352.1| 54|Caenorhabditis elegans Hypothetical
protein F32D1.2 protein.
Length = 54
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 49 AAGVLADDFSQITAVVTSQCTK---NNAEDKVPEVEAALRTFGN 171
AAG+ +SQI A +T +CTK A K PE + T+ N
Sbjct: 6 AAGLNYVRYSQIAAEITRKCTKQVGGKAAVKKPEATLKITTWEN 49
>U40029-7|AAA81127.1| 645|Caenorhabditis elegans Yeast scc (mitotic
condensin subunit)homolog protein 1 protein.
Length = 645
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 136 PEVEAALRTFGNCLKGLVDLNVLKTEIEEAKPNGALDEV 252
P+V+ ALRT G+ L G+V + KT A N A ++
Sbjct: 47 PKVKMALRTVGHLLLGIVRIYSKKTRYLLADTNEAYQKM 85
>AC006708-1|AAL77186.1| 129|Caenorhabditis elegans Hypothetical
protein Y110A7A.20 protein.
Length = 129
Score = 27.1 bits (57), Expect = 8.1
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Frame = +1
Query: 52 AGVLADDFSQITAVVTSQCTK-NNAEDKVPEVEAALRTFGNCLKGLVD-----LNVLKTE 213
AG+ DDF+++ + +A+DK E L+ F GL+D NV++TE
Sbjct: 9 AGLFVDDFNRLRLIDPDVAELLQSAQDKSSEFNDQLKNFQTTTGGLIDSIEEFANVVETE 68
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,404,872
Number of Sequences: 27780
Number of extensions: 226801
Number of successful extensions: 616
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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