Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G04f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.09 |sap61||U2 snRNP-associated protein sap61|Schizosaccha... 103 2e-23
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 31 0.079
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 0.73
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 27 1.7
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 27 1.7
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb... 27 2.2
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p... 26 3.0
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 26 3.9
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 26 3.9
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 5.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 25 5.2
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 25 5.2
SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ... 25 6.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 6.8
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.8
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.0
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.0
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 25 9.0
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 25 9.0
>SPBC36.09 |sap61||U2 snRNP-associated protein
sap61|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 103 bits (247), Expect = 2e-23
Identities = 52/163 (31%), Positives = 90/163 (55%)
Frame = +2
Query: 14 EAILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELY 193
E++LE +R HEE ER A+V + RE + +H+ +++ E S +L +
Sbjct: 3 ESVLETERYAHEELERLQQAIVDRQVANPKAPRERLRLEHQSAQFLNQFRETSKKLLVSH 62
Query: 194 EDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPA 373
E D L+ +E++ ++ + EFY L +I+EFH+K+P+ +S + +Q P
Sbjct: 63 ESSDRLKDQEVARINADDDLTEFYKSLGEIQEFHKKYPDHKVEDLSQLYSIKPSQ---PG 119
Query: 374 EDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIEKVDYITYL 502
D + F EE YG+++DL+ CYE+YINL ++ + Y+ YL
Sbjct: 120 ID-EIDTLFRGEEMYGRFMDLNECYEEYINLSNVQHISYLEYL 161
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 31.5 bits (68), Expect = 0.079
Identities = 22/104 (21%), Positives = 47/104 (45%), Gaps = 14/104 (13%)
Frame = +2
Query: 20 ILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEAS--------- 172
+ +QQR+Y EE R +A + + + E + + + ++HD Y+E++
Sbjct: 785 VAKQQRAYEEEINRIWNAQKRGL---SINNLEELAKKYGINSIHDDYVESNEETTREETP 841
Query: 173 -----IRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKE 289
+R+ LY DK+G + + + P + + ++I E
Sbjct: 842 SSDKVLRIVRLYRDKNGNLERKQETIHDPIVIHAYLKKRREIDE 885
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 28.3 bits (60), Expect = 0.73
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +2
Query: 119 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE--ISALSGPHEFQEFYSRLKQIKEF 292
++ HR D IRLK+ L++E+ + + + F ++LK I+ F
Sbjct: 416 VDFSHRTAVSSDILSLCYIRLKDFLRISGSLKEEQSYYGLKNSIKQIKAFENKLKYIQSF 475
Query: 293 HRKH 304
H KH
Sbjct: 476 HEKH 479
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 27.1 bits (57), Expect = 1.7
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Frame = +2
Query: 20 ILEQQRSYHEERERTMDAMVKEILH----KKTGHRETINADHRL-KNLHDRYI--EASIR 178
ILE Q Y R ++K +LH T ++E N+ L + LH Y E ++
Sbjct: 1012 ILEFQALYSASLRRMRSKLIKSLLHLLEIAPTQYQENKNSLLSLCEGLHSTYTDEELNLL 1071
Query: 179 LKELYEDKDGLRKEEISAL 235
L L+ + +R + AL
Sbjct: 1072 LSNLFHPESSIRSAVLQAL 1090
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 27.1 bits (57), Expect = 1.7
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +2
Query: 35 RSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLR 214
++ HEE +D+ + E++ K+ +E +++ + D + L+EL E+K+ +
Sbjct: 178 QTVHEENTAALDSEIDELM-KQINEKE-----EKIEEISDETDKLQKLLRELDEEKEKVY 231
Query: 215 KEEISALSGPHEFQ 256
EE + ++FQ
Sbjct: 232 AEEQEFYNNLNQFQ 245
>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 730
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +2
Query: 86 ILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPH--EFQE 259
I++ + RE +N R + + +EA +E E+K S++SG H EF E
Sbjct: 184 IINMRACLREPLNRIARQQEAAQKLVEALEGAQEEIENKSVSGNTNSSSVSGNHAAEFLE 243
Query: 260 FYSRLKQ 280
+ LK+
Sbjct: 244 YVESLKK 250
>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 3.0
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = -1
Query: 269 SNRTPGTHVVLTMLIFLLFVIHLYLH 192
S+R PG +L+ + L++ +HL+L+
Sbjct: 213 SSRKPGASQILSSKVQLMYYVHLFLN 238
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 3.9
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +2
Query: 215 KEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAED 379
+E SA+ + QEFY R+ +++ R P+ + + ++ N R+ P+ +
Sbjct: 153 EEATSAIDNLNS-QEFYGRVLNVQKAKRSRPHSPTPGKYMGYDRRRNSRDFPSNN 206
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 3.9
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 182 KELYEDKDGLRKEEISALSGPHEFQEFYSR 271
KE +++D L+KEE + P EF+ F R
Sbjct: 314 KEGLDEQDNLQKEESVHIDVPAEFEAFDER 343
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +2
Query: 71 AMVKEILHKKTGHRETINADHRLKN 145
++ K LHK T H T + H KN
Sbjct: 22 SLYKRRLHKSTSHSSTATSSHYSKN 46
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 225 YQHCQDHMSSRSSIRDLSKLKSFIENIQMKY 317
+Q + SSI+DL + F+EN++ +Y
Sbjct: 70 FQKLLQEKTPLSSIQDLEGFREFMENLEHRY 100
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 419 GKYLDLHSCYEKYINLKGIEK 481
G Y+DL SC K+ L G +K
Sbjct: 1344 GAYIDLISCITKFAKLNGNQK 1364
>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 253
Score = 25.0 bits (52), Expect = 6.8
Identities = 7/19 (36%), Positives = 11/19 (57%)
Frame = +1
Query: 49 GKGKNHGRNGQRNSSQKNW 105
G+G+ GR G + +K W
Sbjct: 16 GRGRGRGRRGAKRDEEKEW 34
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.0 bits (52), Expect = 6.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -2
Query: 388 NCVILSRIFPLICQLFKFYRHGY----RYFIWMFSMKLFNLL 275
+CV++S LI QLF FY G+ + FS +FN L
Sbjct: 911 SCVLISVYQGLIIQLFTFYLIGFEEEGKMLAVCFSCLIFNEL 952
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 25.0 bits (52), Expect = 6.8
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +2
Query: 137 LKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRK 301
L+NL + E +LKEL + + L KEE L + + S+ K++K + K
Sbjct: 22 LQNLKE---ETENQLKELEKKRSQLHKEEQINLQLVYAINDLRSKTKELKAENEK 73
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 24.6 bits (51), Expect = 9.0
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = +2
Query: 83 EILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYE 196
E+ + T +E + ++K LHD + ++KEL E
Sbjct: 135 EVTSRSTSSQEKDELEKQVKTLHDLNEQKDKKIKELKE 172
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
Frame = +2
Query: 128 DHRLKNLHDRYI--EASIRL--KELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFH 295
D +K +++YI IR+ EL+ + +KE + + H+ + F + + EF
Sbjct: 1043 DKDVKAKYEKYILEHCGIRIIEAELFHGYNPEKKELLQEVVIDHDLEPFEASKEAAHEFK 1102
Query: 296 RKHPNEISV 322
+H +++ +
Sbjct: 1103 LRHGDQVEI 1111
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 24.6 bits (51), Expect = 9.0
Identities = 23/125 (18%), Positives = 49/125 (39%)
Frame = +2
Query: 44 HEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEE 223
H+E +DA + E + H+E + A +L ++ E L + + +R +
Sbjct: 14 HKEALEELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSK 73
Query: 224 ISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFT 403
+ ++ E K++KE + VE ++ Q + + T+ +
Sbjct: 74 QTLINKVKAQDELLK--KKVKEL-TAMKKTVPFKSEVELDKHVKQLQAAVDSGTLKI--V 128
Query: 404 DEEGY 418
DE+ Y
Sbjct: 129 DEKKY 133
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 24.6 bits (51), Expect = 9.0
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 27 SNNEATMRKGKEPWTQWSKKFFTKKLGIGRL*MLIIV*RIYMIDILK 167
S N +K K+ WT+ +K+F + I L + + R MI+IL+
Sbjct: 150 STNSFNAKKRKDAWTEEHEKWFQAR--IDELLTIRSISREQMIEILE 194
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,133
Number of Sequences: 5004
Number of extensions: 45097
Number of successful extensions: 187
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -