Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G04f
(521 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g06160.1 68418.m00687 splicing factor-related contains some s... 119 1e-27
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 31 0.36
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 30 1.1
At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zi... 29 1.4
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 29 1.4
At1g44910.1 68414.m05146 FF domain-containing protein / WW domai... 29 1.4
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 29 2.5
At2g27170.1 68415.m06029 structural maintenance of chromosomes (... 29 2.5
At1g65390.2 68414.m07419 disease resistance protein (TIR class),... 29 2.5
At1g65390.1 68414.m07420 disease resistance protein (TIR class),... 29 2.5
At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase fa... 28 3.3
At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase fa... 28 3.3
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi... 28 3.3
At3g53030.1 68416.m05845 protein kinase family protein contains ... 27 5.8
At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative ... 27 5.8
>At5g06160.1 68418.m00687 splicing factor-related contains some
similarity to splicing factor SP:Q12874 from [Homo
sapiens]
Length = 504
Score = 119 bits (286), Expect = 1e-27
Identities = 64/169 (37%), Positives = 102/169 (60%), Gaps = 5/169 (2%)
Frame = +2
Query: 20 ILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYED 199
+LEQ RS HEE ER +V+++ + ++ + HR++++ + + + +L E YED
Sbjct: 5 LLEQTRSNHEEVERLERLVVEDLQKEPPSSKDRLVQGHRVRHMIESIMLTTEKLVETYED 64
Query: 200 KDGLRKEEISAL-----SGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRE 364
KDG +EI+AL +G + F EFY RLK+I+E+H++HP+ V + ++E A +E
Sbjct: 65 KDGAWDDEIAALGGQTATGTNVFSEFYDRLKEIREYHKRHPSGRLVDANEDYE--ARLKE 122
Query: 365 NPAEDYTVPVEFTDEEGYGKYLDLHSCYEKYINLKGIEKVDYITYLSIF 511
P + F+ EEG G+YLDLH Y +YIN K E+V+Y YL +F
Sbjct: 123 EPI------IAFSGEEGNGRYLDLHDMYNQYINSKFGERVEYSAYLDVF 165
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 31.5 bits (68), Expect = 0.36
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 23 LEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDK 202
+E+ +S HE RE D + + G R+ DHR K+ Y IR K+ DK
Sbjct: 3 VEKSKSRHEIREERADYEGSPVREHRDGRRK--EKDHRSKDKEKDYDREKIRDKDHRRDK 60
Query: 203 DGLRKEEIS 229
+ R + S
Sbjct: 61 EKERDRKRS 69
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 29.9 bits (64), Expect = 1.1
Identities = 28/118 (23%), Positives = 50/118 (42%)
Frame = +2
Query: 8 RHEAILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE 187
+HEA+ E +R +E +R DAM K + ++ + RL H R E ++ K
Sbjct: 344 KHEALTELERQKLDEDKRKSDAMNKSLQLASREQKKADESVLRLVEEHQRQKEDALN-KI 402
Query: 188 LYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQR 361
L +K K+ + E QE +L+ +K + M +EL +++
Sbjct: 403 LLLEKQLDTKQTLEM-----EIQELKGKLQVMKHLGDDDDEAVQTKMKEMNDELDDKK 455
>At3g12550.1 68416.m01562 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 29.5 bits (63), Expect = 1.4
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 2/107 (1%)
Frame = +2
Query: 122 NADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSG-PHEFQEFYSRLKQIKEFHR 298
N +RLK L +Y + S++LK E+K+ + + L+G + + ++R+ E +
Sbjct: 270 NKQYRLKKLQIKYSQDSVKLKYETEEKEKILRAYSEDLTGRQQKSTDHFNRIFADHEKQK 329
Query: 299 KHPNEISVPMSVEFEELA-NQRENPAEDYTVPVEFTDEEGYGKYLDL 436
+ + ELA + EN + V E Y+ L
Sbjct: 330 VQLESQIKELEIRKLELAKREAENETQRKIVAKELEQNAAINSYVQL 376
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 137 LKNLHDRYIEASIR---LKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHP 307
L H+R + + LKE+ ++ L+ +SA +FQE++S +K R HP
Sbjct: 190 LDEAHERTLATDVLFGLLKEVLRNRPDLKLVVMSATLEAEKFQEYFSGAPLMKVPGRLHP 249
Query: 308 NEI 316
EI
Sbjct: 250 VEI 252
>At1g44910.1 68414.m05146 FF domain-containing protein / WW
domain-containing protein contains Pfam profiles
PF01846: FF domain, PF00397: WW domain
Length = 946
Score = 29.5 bits (63), Expect = 1.4
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 26 EQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKD 205
E ++ YHE++ DAM +K + I+ D + + D I LK +Y+D
Sbjct: 671 ELEKQYHEDKSYVKDAMKS----RKANFKSAISEDLSTQQISD------INLKLIYDDLV 720
Query: 206 G--LRKEEISALSGPHEFQEFYSRLKQIKE 289
G KEE A +EF + L KE
Sbjct: 721 GRVKEKEEKEARKLQRLAEEFTNLLHTFKE 750
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +2
Query: 137 LKNLHDRYIEASIR---LKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHP 307
L H+R + + LKE+ +++ L+ +SA +FQ+++S +K R HP
Sbjct: 186 LDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQDYFSGAPLMKVPGRLHP 245
Query: 308 NEI 316
EI
Sbjct: 246 VEI 248
>At2g27170.1 68415.m06029 structural maintenance of chromosomes
(SMC) family protein similar to basement
membrane-associated chondroitin proteoglycan Bamacan
[Rattus norvegicus] GI:1785540; contains Pfam profile
PF02463: RecF/RecN/SMC N terminal domain. No suitalble
start codon was identified.
Length = 1207
Score = 28.7 bits (61), Expect = 2.5
Identities = 22/100 (22%), Positives = 50/100 (50%)
Frame = +2
Query: 65 MDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGP 244
+D ++E+ +K R+ D + K+L E +I KEL++ ++ L + E++
Sbjct: 196 LDERLRELDEEKEELRKYQQLDKQRKSL-----EYTIYDKELHDAREKLEQVEVARTKAS 250
Query: 245 HEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQRE 364
E + Y R+++ ++ K +E ++ E + L ++E
Sbjct: 251 EESTKMYDRVEKAQD-DSKSLDESLKELTKELQTLYKEKE 289
>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 297
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 179 LKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSV--EFEELA 352
+K + + ++K +G E+Q+F ++ + PNE +V ++V EF ++
Sbjct: 176 VKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPNEEAVQVTVLNEFYQMK 235
Query: 353 NQRENPAEDYTVPVEFTDEEG 415
NQ P+ ++ V+ T +G
Sbjct: 236 NQSPVPSYEFKFWVDLTRPKG 256
>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
putative domain signature TIR exists, suggestive of a
disease resistance protein.
Length = 411
Score = 28.7 bits (61), Expect = 2.5
Identities = 19/81 (23%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Frame = +2
Query: 179 LKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSV--EFEELA 352
+K + + ++K +G E+Q+F ++ + PNE +V ++V EF ++
Sbjct: 176 VKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPNEEAVQVTVLNEFYQMK 235
Query: 353 NQRENPAEDYTVPVEFTDEEG 415
NQ P+ ++ V+ T +G
Sbjct: 236 NQSPVPSYEFKFWVDLTRPKG 256
>At4g36050.2 68417.m05132 endonuclease/exonuclease/phosphatase
family protein
Length = 609
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +2
Query: 113 ETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEF 292
ET+ A + NL D +S+R + +DG RK+ S + F++ ++
Sbjct: 428 ETVAATGSIDNLSDGIRASSVRALNI--SRDGDRKKARKIQSSQLSLKSFFTTNSKVNNV 485
Query: 293 HRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEE 412
+ +S S + E + + ED + P T E+
Sbjct: 486 EDSSSSYVSSSPSSQVESITEPNVSGKED-SEPTTSTQEQ 524
>At4g36050.1 68417.m05131 endonuclease/exonuclease/phosphatase
family protein
Length = 408
Score = 28.3 bits (60), Expect = 3.3
Identities = 22/100 (22%), Positives = 41/100 (41%)
Frame = +2
Query: 113 ETINADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEF 292
ET+ A + NL D +S+R + +DG RK+ S + F++ ++
Sbjct: 227 ETVAATGSIDNLSDGIRASSVRALNI--SRDGDRKKARKIQSSQLSLKSFFTTNSKVNNV 284
Query: 293 HRKHPNEISVPMSVEFEELANQRENPAEDYTVPVEFTDEE 412
+ +S S + E + + ED + P T E+
Sbjct: 285 EDSSSSYVSSSPSSQVESITEPNVSGKED-SEPTTSTQEQ 323
>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 28.3 bits (60), Expect = 3.3
Identities = 28/118 (23%), Positives = 49/118 (41%)
Frame = +2
Query: 8 RHEAILEQQRSYHEERERTMDAMVKEILHKKTGHRETINADHRLKNLHDRYIEASIRLKE 187
+HEA+ E R +E +R DAM K + ++ + RL H R E ++ K
Sbjct: 343 KHEALTELDRQKLDEDKRKSDAMNKSLQLASREQKKADESVLRLVEEHQRQKEDALN-KI 401
Query: 188 LYEDKDGLRKEEISALSGPHEFQEFYSRLKQIKEFHRKHPNEISVPMSVEFEELANQR 361
L +K K+ + E QE +L+ +K + M +EL +++
Sbjct: 402 LLLEKQLDTKQTLEM-----EIQELKGKLQVMKHLGDDDDEAVQKKMKEMNDELDDKK 454
>At3g53030.1 68416.m05845 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 529
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +1
Query: 52 KGKNHGRNGQRNSSQKNWASGDYKC 126
KGK G+ G R+S + AS D KC
Sbjct: 282 KGKQGGKKGSRSSRRHLVASADLKC 306
>At1g14790.1 68414.m01768 RNA-dependent RNA polymerase, putative
similar to RNA-directed RNA polymerase GB:CAA09697
GI:4138282 [Nicotiana tabacum]
Length = 1107
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/55 (21%), Positives = 27/55 (49%)
Frame = +2
Query: 119 INADHRLKNLHDRYIEASIRLKELYEDKDGLRKEEISALSGPHEFQEFYSRLKQI 283
+N +R+ + +YI +R+ + ED + +R ++S S + Y R+ +
Sbjct: 384 VNVSNRVLRHYSKYINNFLRVSFVDEDLEKVRSMDLSPRSSTQRRTKLYDRIYSV 438
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,989,513
Number of Sequences: 28952
Number of extensions: 220532
Number of successful extensions: 731
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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