Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G03f
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 165 5e-42
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.045
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 29 0.32
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 27 2.2
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.2
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 27 2.2
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 26 3.0
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 26 3.9
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac... 25 6.8
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 25 6.8
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 9.0
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 165 bits (400), Expect = 5e-42
Identities = 83/122 (68%), Positives = 100/122 (81%)
Frame = +1
Query: 154 LYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLAL 333
LYPIAVLIDELK++++ RLN++++LSTIALALG ERT+ ELIPFL E+I DEDEVL AL
Sbjct: 10 LYPIAVLIDELKHDEITYRLNALERLSTIALALGPERTRDELIPFLDESIDDEDEVLSAL 69
Query: 334 AEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFV 513
A+QLGNF++ VGG E+AH LL PLE LAA EETVVRDKAV SL V S + LE++FV
Sbjct: 70 ADQLGNFVDYVGGPEYAHVLLSPLENLAATEETVVRDKAVDSLNKVCICLSQEQLEQYFV 129
Query: 514 PL 519
PL
Sbjct: 130 PL 131
Score = 39.5 bits (88), Expect = 3e-04
Identities = 31/123 (25%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
Frame = +1
Query: 157 YPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLAL 333
Y + + ++ LK+E+ ++RLN I KL + +G+E L+P + D+ V LA+
Sbjct: 362 YLLPMFLELLKDENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVRLAI 421
Query: 334 AEQLGNFINLVGGGEFAHCLLPPLETLAAVEETV--VRDKAVASLRAVAEHHSPQALEEH 507
+ + + G EF + + L ++ +E+ V +R+ A+ +LR + E + E
Sbjct: 422 IDYIPLLAQQL-GVEFFNEKMGNL-CMSWLEDHVYSIREAAIKNLRKLTEIFGLEWATET 479
Query: 508 FVP 516
+P
Sbjct: 480 IIP 482
Score = 38.7 bits (86), Expect = 5e-04
Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Frame = +1
Query: 154 LYPIAVLIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLL 327
L I +I EL N+ Q +R + +A LG E+T L+P E + DE+ EV L
Sbjct: 321 LEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGKEKTTEYLLPMFLELLKDENPEVRL 380
Query: 328 ALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVR 441
+ +L +VG + LLP + TLA ++ VR
Sbjct: 381 NIISKLEVVNKVVGIELLSQSLLPAIVTLAEDKQWRVR 418
>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 350
Score = 32.3 bits (70), Expect = 0.045
Identities = 15/53 (28%), Positives = 32/53 (60%)
Frame = +1
Query: 106 VKYVRMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVER 264
++YV + SD TDES++P+ + +++++D + +S L + A+A G +
Sbjct: 53 LRYVNYSMSDE-TDESMFPLDSELTDMEDDDTEYISDSTTDLPSAAMARGTRQ 104
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 29.5 bits (63), Expect = 0.32
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 181 ELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGN 351
EL+NE +Q LNS K L T L E ++L+ FL T + E + +L QL N
Sbjct: 295 ELENEKIQTELNSWKSLITNELPT-PEAVSNKLV-FLQNTNANLGERVSSLESQLSN 349
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 26.6 bits (56), Expect = 2.2
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 211 LNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGN-FINLVGGGEFAH 387
+NS KK + + V T E IPF + D+ A+ L + F NLV GE A+
Sbjct: 595 VNSQKKTAPEVSPISV--TLIEQIPFFLQKRDISDDSKDAVLSWLSDLFSNLVCTGEDAN 652
Query: 388 CLLPPLETL 414
CL LE +
Sbjct: 653 CLFHLLENV 661
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 217 SIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLLALAEQLGNFINLV 366
SIKK T + G+E +S ++ F + DE L+ Q+ + +NL+
Sbjct: 138 SIKKEGTQVIVFGIETVRSMVLSFPLIILSTLDENFLSEVAQVFSSLNLL 187
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Frame = +1
Query: 115 VRMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVE--RTKSELIPF 288
V +A+ S +D L+ L++ ++ RL +I+ + + LG T + +PF
Sbjct: 1552 VELASVASSSDNFRSMNTQLLQYLRSSNINARLLAIQIQTQLYGRLGENWISTLPQSVPF 1611
Query: 289 LTETIYDEDEVLLALAEQLGNFIN 360
+ E + D+D+ + +L I+
Sbjct: 1612 IAELMEDDDDQVETATAELVRIID 1635
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 391 LLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALE 501
LLP + A ++ VRD A+A+ +A+ +P A++
Sbjct: 96 LLPAVIAKVADKQNAVRDAAIAASKAIVRCTTPYAVK 132
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 238 IALALGVERTKSELIPFLTETIYDEDEVL 324
+ L +E+ K E++PFL Y +EVL
Sbjct: 473 LVLKSSIEKEKVEIVPFLDIRKYSPNEVL 501
>SPCC4G3.08 |psk1||serine/threonine protein kinase
Psk1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 6.8
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 169 VLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSE 276
VL+ + KN +KK S + A G+E+TK+E
Sbjct: 105 VLLVKQKNTGRLFAQKQLKKASIVLRAKGLEQTKNE 140
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 25.0 bits (52), Expect = 6.8
Identities = 14/41 (34%), Positives = 26/41 (63%)
Frame = +1
Query: 70 LVSV*FELKLKRVKYVRMAASDSGTDESLYPIAVLIDELKN 192
L+S F L +K +R++ +++ T SL+ I L+D+L+N
Sbjct: 552 LLSFPFRL-IKEFLNLRLSCAENITSISLFTIDSLLDDLRN 591
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 24.6 bits (51), Expect = 9.0
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -2
Query: 103 SLISIRTKRTLNCHTKS*VLSITDFYQNK 17
SLI + + TLN KS +L+++DF Q++
Sbjct: 280 SLIRLLAEHTLNPVEKSVLLALSDFRQDE 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,773,698
Number of Sequences: 5004
Number of extensions: 29584
Number of successful extensions: 91
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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