Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307G03f
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 164 4e-41
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 0.74
02_03_0007 - 13875735-13875826,13876217-13877465 29 1.7
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 29 3.0
05_06_0070 + 25342965-25343882,25343968-25344618 28 4.0
09_04_0355 + 16922863-16924224 27 9.1
07_03_0025 + 12587868-12588429,12591820-12592031,12592212-125926... 27 9.1
04_04_0769 + 27957562-27957745,27958444-27958511,27958977-279590... 27 9.1
02_05_0455 - 29154374-29155136,29155257-29156455,29156904-291570... 27 9.1
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 164 bits (398), Expect = 4e-41
Identities = 84/125 (67%), Positives = 96/125 (76%)
Frame = +1
Query: 145 DESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVL 324
DE LYPIA+LIDELKNED+QLRLNSI++LSTIA ALG ERT+ ELIPFL+E DEDEVL
Sbjct: 5 DEPLYPIAILIDELKNEDIQLRLNSIRRLSTIARALGEERTRKELIPFLSENNDDEDEVL 64
Query: 325 LALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEE 504
LA+AE+LG FI VGG E AH LLPPLETL VEET VRDKAV SL + + +
Sbjct: 65 LAMAEELGVFIPYVGGVEHAHVLLPPLETLCTVEETCVRDKAVESLCRIGAQMKESDIVD 124
Query: 505 HFVPL 519
FVP+
Sbjct: 125 WFVPV 129
Score = 48.4 bits (110), Expect = 3e-06
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Frame = +1
Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-E 318
T E L PI + + LK+E +RLN I KL + +G++ L+P + E D
Sbjct: 355 TIEQLLPIFLSL--LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 412
Query: 319 VLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 498
V LA+ E + + +G G F L + +RD A +L+ +AE P+
Sbjct: 413 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIRDAAANNLKRLAEEFGPEWA 472
Query: 499 EEHFVP 516
+H +P
Sbjct: 473 MQHIIP 478
Score = 30.7 bits (66), Expect = 0.74
Identities = 26/117 (22%), Positives = 46/117 (39%), Gaps = 2/117 (1%)
Frame = +1
Query: 172 LIDELKNEDVQ-LRLNSIKKLSTIALALGVERTKSELIPFLTETIYDED-EVLLALAEQL 345
+ D+L +D +RL +++ + + L + + ++P + D+ V +A QL
Sbjct: 206 IFDDLTQDDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 265
Query: 346 GNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQALEEHFVP 516
VG L+P L E VR A + SPQ +H +P
Sbjct: 266 YELCEAVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILP 322
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 0.74
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +1
Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEV 321
T++ L PI L + D QLR ++ + +G + L+P+L + + DE EV
Sbjct: 742 TNDFLLPILPAF--LNDRDEQLRAVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEV 799
Query: 322 LL 327
+L
Sbjct: 800 VL 801
Score = 28.3 bits (60), Expect = 4.0
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Frame = +1
Query: 148 ESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYDEDEVLL 327
+S+Y I + + + +R ++ + + G +T L+P L + D DE L
Sbjct: 703 KSIYEIVQELVMGQKQTPNVRRALLQDIGYLCYFFGHRQTNDFLLPILPAFLNDRDEQLR 762
Query: 328 AL-AEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASL 462
A+ Q+ +G LLP LE + E VV K + L
Sbjct: 763 AVYFGQIVVVCYFIGSRSVEEYLLPYLEQALSDEMEVVLVKVLDCL 808
>02_03_0007 - 13875735-13875826,13876217-13877465
Length = 446
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = +1
Query: 316 EVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E+LL +L + +GG EF+ +P A+ ++ ++ + AV H SP+A
Sbjct: 219 ELLLINTPRLDSLKITLGGNEFS---VPFSRARIALTNPLLEIESAKEITAVPPHESPKA 275
Query: 496 LEEHFVP 516
L E VP
Sbjct: 276 LLEDEVP 282
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 28.7 bits (61), Expect = 3.0
Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 6/126 (4%)
Frame = +1
Query: 139 GTDESLYPIAV--LIDELKNEDVQL-RLNSIKKLSTIALALGVERTKSELIPFLTETIYD 309
G E ++P V L+D LK++ + R + + LS + ALG + +++P +
Sbjct: 1609 GMGEEIFPDLVPWLLDTLKSDSSNVERSGAAQGLSEVLAALGKDYF-DQILPDIIRNCSH 1667
Query: 310 EDEVLLALAEQLGNFINLVGGGEFAHCL---LPPLETLAAVEETVVRDKAVASLRAVAEH 480
+ + L ++ GG F + L LP + A E VRD A+++ EH
Sbjct: 1668 QKASVRDGHLTLFRYLPRSLGGVFQNYLQIVLPAILDGLADENESVRDAALSAGHVFVEH 1727
Query: 481 HSPQAL 498
++ +L
Sbjct: 1728 YATSSL 1733
>05_06_0070 + 25342965-25343882,25343968-25344618
Length = 522
Score = 28.3 bits (60), Expect = 4.0
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +1
Query: 307 DEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETL---AAVEETVVRDKAVAS 459
DED V + EQLG L + A L PP+ L A+E+TV+ VA+
Sbjct: 353 DEDTVAVVREEQLGKMTLLRAAMKEAMRLHPPVPLLIPREAIEDTVLHGHRVAA 406
>09_04_0355 + 16922863-16924224
Length = 453
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = +1
Query: 133 DSGTDESLYPIAVLIDELKNEDVQLRL 213
DSGT +L+P+AVL + ++ QLRL
Sbjct: 326 DSGTALTLFPVAVLAEVVRAFRSQLRL 352
>07_03_0025 +
12587868-12588429,12591820-12592031,12592212-12592603,
12592608-12592965
Length = 507
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = +1
Query: 316 EVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQA 495
E LL +LG+ +G EF+ +P + +++ ++ + AV H SP+A
Sbjct: 115 EQLLINTPRLGSLKITLGENEFS---IPFSRARITLTDSLPEIESAEEVTAVPPHESPEA 171
Query: 496 LEEHFVP 516
L E VP
Sbjct: 172 LLEDEVP 178
>04_04_0769 +
27957562-27957745,27958444-27958511,27958977-27959058,
27959193-27959239,27959349-27959474,27960439-27960526,
27960922-27961034,27961976-27962038,27962110-27962165,
27962502-27962594,27962991-27963092,27963178-27963226,
27963318-27963386,27963486-27963572
Length = 408
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = +1
Query: 394 LPPLETLAAVEETVVRDKAVASLRAV 471
L PLE LAA +TV KAV SL A+
Sbjct: 165 LEPLEALAAASKTVDCLKAVHSLHAI 190
>02_05_0455 -
29154374-29155136,29155257-29156455,29156904-29157011,
29157129-29157314,29157761-29157859,29159613-29159773,
29160856-29160913
Length = 857
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 361 LVGGGEFAHCLLPPLETLAAVEE-TVVRDKAVASLRAVAEH 480
++ G FA C L L L VEE TV+ K L +VAE+
Sbjct: 697 ILSEGTFAECCLEILRNLCDVEEATVLITKTDRCLGSVAEY 737
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,738,032
Number of Sequences: 37544
Number of extensions: 199522
Number of successful extensions: 599
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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