Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G03f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a ...   202   1e-52
Z68159-8|CAD01080.1|  310|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen pro...    27   6.2  
AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical ...    27   8.1  

>U23514-5|AAC46541.2|  590|Caenorhabditis elegans Phosphatase 2a
           regulatory a subunitprotein 1 protein.
          Length = 590

 Score =  202 bits (493), Expect = 1e-52
 Identities = 99/133 (74%), Positives = 113/133 (84%)
 Frame = +1

Query: 121 MAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTET 300
           M+  +  TD++LYPIAVLIDEL+NEDV LRLNSI+KLSTIALALGVERT++ELI FLT+T
Sbjct: 1   MSVVEEATDDALYPIAVLIDELRNEDVTLRLNSIRKLSTIALALGVERTRNELIQFLTDT 60

Query: 301 IYDEDEVLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
           IYDEDEVLL LAEQLGNF  LVGG +  HCLL PLE LA VEETVVRDKAV SLR +A+ 
Sbjct: 61  IYDEDEVLLVLAEQLGNFTPLVGGPDHVHCLLLPLENLATVEETVVRDKAVESLRKIADK 120

Query: 481 HSPQALEEHFVPL 519
           HS  +LEEHFVP+
Sbjct: 121 HSSASLEEHFVPM 133



 Score = 27.5 bits (58), Expect = 6.2
 Identities = 26/126 (20%), Positives = 52/126 (41%), Gaps = 1/126 (0%)
 Frame = +1

Query: 142 TDESLYPIAVLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELIPFLTETIYD-EDE 318
           T   L PI + +  L ++  ++RLN I  L  +   +G  +  + L+P +     D +  
Sbjct: 363 TVSELLPIYMQL--LNDQTPEVRLNIISSLDKVNEVIGAAQLSTSLLPAIVGLAEDGKWR 420

Query: 319 VLLALAEQLGNFINLVGGGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEHHSPQAL 498
           V LA+ + +    + +G   F   LLP            +R+ +   ++ + +    Q  
Sbjct: 421 VRLAIVQFMPLLASQLGQEFFDEKLLPLCLNWLTDHVFSIREASTLIMKELTQKFGGQWA 480

Query: 499 EEHFVP 516
             + VP
Sbjct: 481 STNIVP 486


>Z68159-8|CAD01080.1|  310|Caenorhabditis elegans Hypothetical
           protein C33D9.9 protein.
          Length = 310

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
 Frame = +1

Query: 118 RMAASDSGTDESLYPIAVLIDELKNEDVQLRLNSIK-------KLSTIALALGVERTKSE 276
           R+ +S+     S YPIA + + LKNE++Q    ++K       KL+     L + R K  
Sbjct: 235 RVISSEELEASSSYPIASMKNCLKNEEIQKMQKALKEKDEQISKLTEQLQGLLINRDKET 294

Query: 277 LIPFLTETIYDED 315
            +  L +  YD D
Sbjct: 295 KVEDLQQFEYDGD 307


>AF022985-12|AAB69959.1|  319|Caenorhabditis elegans Collagen
           protein 143 protein.
          Length = 319

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 370 GGEFAHCLLPPLETLAAVEETVVRDKAVASLRAVAEH 480
           GG+ A+C  P   ++ AV   V  ++ VA  R V  H
Sbjct: 262 GGDAAYCPCPARSSVMAVNRRVAVNRNVARNRVVVRH 298


>AF003134-6|AAB54146.3|  827|Caenorhabditis elegans Hypothetical
           protein ZC581.9 protein.
          Length = 827

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +1

Query: 169 VLIDELKNEDVQLRLNSIKKLSTIALALGVERTKSELI-------PFLTETIYDEDEVLL 327
           V+I  LK+ED  L+ ++++ L  +A  L V     +LI       PFL E +  + ++L 
Sbjct: 472 VIILSLKSEDTSLQSSAVRGLPHVAEYLPVGFITKKLIPAIMGLPPFLHENVPRQLDLLA 531

Query: 328 ALA 336
           ALA
Sbjct: 532 ALA 534


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,909,717
Number of Sequences: 27780
Number of extensions: 168606
Number of successful extensions: 498
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)