Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G01f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0096 + 11158108-11159083,11159116-11159744                       29   1.7  
01_03_0018 - 11686420-11687460                                         29   3.0  
01_03_0271 + 14454681-14456949,14457222-14457476,14458800-144588...    28   4.0  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    27   9.1  
03_02_0359 - 7788382-7788522,7788931-7789837,7791227-7791337,779...    27   9.1  

>04_03_0096 + 11158108-11159083,11159116-11159744
          Length = 534

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 44  IEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISSGDLS 175
           ++  P V+ GRH    R +     ++    SY D N++ S DLS
Sbjct: 168 VDSEPPVFPGRHYELPRSLYSCVALQTLCLSYCDLNLLESIDLS 211


>01_03_0018 - 11686420-11687460
          Length = 346

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +2

Query: 113 TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLV 259
           T+E   +   +A     G +  WP   S    TR   + E   RG GLV
Sbjct: 291 TIELMEEPMRNAEFFRRGVVGGWPNYLSPEMATRIDEITESKFRGSGLV 339


>01_03_0271 +
           14454681-14456949,14457222-14457476,14458800-14458864,
           14459053-14459171,14459270-14459324
          Length = 920

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 20  DVHDKE--LKIEENPRVYCGRHLANARMILCYDT 115
           +VHD +  LK+  N RV+CG H+        +DT
Sbjct: 814 EVHDPQIPLKLAPNQRVFCGLHMEIVLEAYMFDT 847


>04_01_0162 +
           1845295-1846317,1846430-1846565,1848436-1848626,
           1848780-1848887,1849001-1849204,1849294-1849525,
           1849602-1849751,1849830-1850007,1850416-1850519,
           1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 208 LGVLGRQARPGAQISRRNNVCVEIRLGSLLDSV 110
           LG + RQA  GA +S  + + VE  L   LDSV
Sbjct: 756 LGEMYRQADTGAIVSLLSRIAVENSLSDKLDSV 788


>03_02_0359 -
           7788382-7788522,7788931-7789837,7791227-7791337,
           7791437-7791507,7791582-7791659,7792564-7792770,
           7792867-7793046,7793249-7793471,7794133-7794453,
           7794538-7795109
          Length = 936

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +1

Query: 124 ESPILSRRKHYFVGR-FE-LLAWPVFPVRQDSRFCSRRKI*TRPWLSRRML 270
           +S + +RR H  + +  E  L W +F    DS+FC R+   T P + ++ L
Sbjct: 267 KSHLQNRRNHLILPKALEWTLNWCIFQSMFDSKFCVRKDFLTSPAVLKKRL 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,539
Number of Sequences: 37544
Number of extensions: 213292
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)