Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G01f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)               31   0.76 
SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.1  
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)                     27   7.1  
SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_21009| Best HMM Match : Insulin (HMM E-Value=7.5e-06)
          Length = 122

 Score = 30.7 bits (66), Expect = 0.76
 Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = +2

Query: 68  CGRHLANARMILCYD---TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKS 238
           CG  +++A  I+CY    T  +R  +  D +I+ S D +      +Q  K  +       
Sbjct: 48  CGDQISDAWTIICYGGGVTARQRQINRRDLSIVQSADEARQFNSKTQRGKRSSIYT---- 103

Query: 239 KRGPGLVDECCLKPCYTYDLLNYC 310
                + +ECC++ C   ++  YC
Sbjct: 104 -----ITEECCVEGCKQEEIREYC 122


>SB_10135| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 4/24 (16%)
 Frame = +2

Query: 257 VDECC----LKPCYTYDLLNYC*T 316
           +D CC    L PCYTY LL+ C T
Sbjct: 162 LDSCCTYRFLDPCYTYRLLDPCCT 185


>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 937

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/46 (39%), Positives = 21/46 (45%)
 Frame = +2

Query: 38  LKIEENPRVYCGRHLANARMILCYDTVEKRAQSYLDANIISSGDLS 175
           L  E  P V C R +   RM LC  T    + SY    +I S DLS
Sbjct: 757 LSNENEPYVVCHRFICQCRMSLCCVTTCHMSVSY----VIVSSDLS 798


>SB_19731| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 665

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 19/64 (29%), Positives = 25/64 (39%)
 Frame = +3

Query: 48  RKILGSIADVIWPTHA*YSAMTLSRREPNLISTQTLFRREI*APGLACLPSTPRLALLLS 227
           R+I   +  + W     Y    LS           LFR E+   G +  P  PRL  L +
Sbjct: 332 REIRAKLFRLFWLRTIAYHPEFLSSASHTNTQGIILFRAELSILGASYFPYLPRLQRLTT 391

Query: 228 PKNL 239
           P NL
Sbjct: 392 PNNL 395


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,594,055
Number of Sequences: 59808
Number of extensions: 244876
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)