Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307G01f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14780.1 68414.m01767 expressed protein                             27   5.8  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   7.7  
At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) n...    27   7.7  
At1g31720.1 68414.m03892 expressed protein                             27   7.7  

>At1g14780.1 68414.m01767 expressed protein
          Length = 627

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -1

Query: 83  PNDVRNRPEDFPQFSTLCRGRQHSP 9
           P    N+   F   S LCRG QHSP
Sbjct: 568 PVPANNKIVKFVDLSQLCRGPQHSP 592


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 113 TVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFALAEKSKRG 247
           TV  +A+ Y D N+I   D   +  L+ Q+ +   + +  K  RG
Sbjct: 69  TVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRG 113


>At3g12280.1 68416.m01533 retinoblastoma-related protein (RBR1) nearly
            identical to retinoblastoma-related protein [Arabidopsis
            thaliana] GI:8777927; contains Pfam profiles: PF01858
            retinoblastoma-associated protein A domain, PF01857
            retinoblastoma-associated protein B domain
          Length = 1013

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
 Frame = -2

Query: 172  QISRRNNVCVEIRLGSLLDSVIAE----YHACVGQMTSA 68
            ++S  +NV V    GS +D++I+     Y+ACVG+ T A
Sbjct: 901  KVSAVHNVYVSPLRGSKMDALISHSTKSYYACVGESTHA 939


>At1g31720.1 68414.m03892 expressed protein
          Length = 194

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 89  ARMILCYDTVEKRAQSYLDANIISSGDLSSWPGLSSQYAKTRAFAL 226
           A   LC     ++A++ L A +   G    W G S    + RAF L
Sbjct: 28  AAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGL 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,467,363
Number of Sequences: 28952
Number of extensions: 172643
Number of successful extensions: 413
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)