Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    22   2.9  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    22   2.9  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       22   3.8  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   6.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 426 NNMCLKAQHTNAPLNNNHLDMPIWMLHIY 512
           +N C   Q  N P++  H D   W+  I+
Sbjct: 81  SNYCDNKQQANPPISTEHCD---WLYGIF 106


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 473 VVQGGIG--MLRLEAHIVGKHWKVHHPKPILLDQDL 372
           V QGG    + RLE H+  K W     +P +  Q L
Sbjct: 223 VWQGGESEALARLERHLERKAWVASFGRPKMTPQSL 258


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 85  YNDLSHKSSTVRGVSYDRDEQI 20
           Y  +SH   ++RGV Y  D  I
Sbjct: 220 YGVVSHDDGSLRGVRYTADGTI 241


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 426 WEALEGPPPEADPSGPGLKS 367
           W+A   P P A    P LKS
Sbjct: 66  WQANSPPSPPAPSELPALKS 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,400
Number of Sequences: 336
Number of extensions: 2589
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)