Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   2.2  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   3.0  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   3.9  
SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr ...    25   6.8  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    25   9.0  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    25   9.0  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   9.0  

>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 103 ISHYWNYNDLSHKSSTVRGVSYDRDEQ 23
           IS Y +Y D+ H S T + +SY  D++
Sbjct: 17  ISTYLDYKDIVHLSETCKSLSYVFDDK 43


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -1

Query: 338 LFAGPSSCSAARCGR 294
           L   PSSCS +RCGR
Sbjct: 133 LITDPSSCSFSRCGR 147


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 216 CGQTASELGDCVNVFAVESRSGFTIKTAASCG 311
           CG+ ASE+ D    FAV  R  F ++T +  G
Sbjct: 751 CGKDASEIQDVKEAFAVNRR--FWVQTLSDIG 780


>SPBC3B9.08c |||Mago-nashi homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = -3

Query: 378 GLKSNGDILRDMRLVCWSIVMLSRTMRP 295
           GLK    +++D++ +C+S++ L+  +RP
Sbjct: 117 GLKVFYYLIQDLKALCFSLISLNFKLRP 144


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 99  LILARSAIIFTQLL*DKMCWISV 167
           L++ R A++F QLL  K  W SV
Sbjct: 5   LLVPRRALLFGQLLPPKYSWYSV 27


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 408  PPPEADPSGPGLKSNGDILRDMRLVCWSI 322
            P    + S PG+ + GD  R   LV W I
Sbjct: 2050 PTKSYETSVPGIYAAGDCRRGQSLVVWGI 2078


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -2

Query: 262 AKTFTQSPSSLAVWPQH*LPLASCTCSSTKVGTEIQHILSYNNCVKI--IALRAN 104
           AK + ++   ++  PQ  LPL   +  S     +  H++ Y N   I  + LR+N
Sbjct: 187 AKNYEENREPMSPSPQEALPLMPSSPPSQDYQNDQNHLILYTNSESIPKLNLRSN 241


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,129,712
Number of Sequences: 5004
Number of extensions: 41499
Number of successful extensions: 99
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)