Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318...    29   1.7  
02_02_0199 - 7710487-7710804,7710907-7711298,7711543-7711878,771...    29   3.0  
10_08_1066 + 22666109-22666302,22668316-22668919                       28   5.2  
09_06_0371 + 22615809-22617431,22618312-22618422,22619361-226194...    27   6.9  

>07_01_0418 -
           3186093-3186437,3187286-3187438,3187541-3188398,
           3188479-3188541
          Length = 472

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 414 PVLPNNMCLKAQHTNAPLNNNHLDMPIWMLHI 509
           P+L  N+C+K QH  + L     ++P  +LH+
Sbjct: 265 PLLLTNVCMKLQHARSSLGYIFTNLPSTLLHL 296


>02_02_0199 -
           7710487-7710804,7710907-7711298,7711543-7711878,
           7711971-7711996,7712466-7712525,7712625-7712696,
           7712784-7712927,7714165-7714236,7714350-7714482,
           7714572-7714680
          Length = 553

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 340 ACLLVHRHAQPHDAAVFIVNPERLS 266
           +C    RH  PHD++ FI+ P  LS
Sbjct: 526 SCSFSVRHEDPHDSSSFIIEPIELS 550


>10_08_1066 + 22666109-22666302,22668316-22668919
          Length = 265

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = -2

Query: 349 GHEACLLVHRHAQPHDAA----VFIVNPERLSTAKTFTQSPSSLAVWPQH*LPLASCTC 185
           G E  L +H+ A+  D A    +   NP  L++    +++P  LA W  H + L  C C
Sbjct: 25  GEEDDLHLHKAARSGDLAAAESLCEANPLALNSRDRLSRTPLHLAAWAGH-VELVKCLC 82


>09_06_0371 +
           22615809-22617431,22618312-22618422,22619361-22619453,
           22619562-22619661,22619754-22619834,22620774-22621047,
           22621254-22622069,22622921-22623029,22623509-22623602,
           22623881-22623939,22624150-22624197
          Length = 1135

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 260 KNVHTVTEFTSGLAATLAAACELHLFKH*SRH 165
           K+VHT T   +GLA    +   LHLF H   H
Sbjct: 265 KDVHTWTVMIAGLALNGFSTDALHLFTHMKDH 296


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,698,399
Number of Sequences: 37544
Number of extensions: 310216
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)