Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)                29   1.8  
SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  

>SB_25938| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 171 TLVLEQVQLASGS*CCGQTASELGDCVNVFAVESRSGFTIKTAASCG 311
           ++V+ QVQL  G    G  +  LG CV+    ++RSG  +     CG
Sbjct: 162 SVVMAQVQLTPGH--SGSISHFLGKCVHTLGSQTRSGTQLVLYDECG 206


>SB_24662| Best HMM Match : DUF229 (HMM E-Value=1.2e-26)
          Length = 972

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 171 TLVLEQVQLASGS*CCGQTASELGDCVNVFAVESRSGFTIKTAASCG 311
           ++V+ QVQL  G    G  +  LG CV+    ++RSG  +     CG
Sbjct: 162 SVVMAQVQLTPGH--SGSISHFLGKCVHTLGSQTRSGTQLVLYDECG 206


>SB_47663| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1409

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -3

Query: 405 PPEADPSGPGLKSNGDILRDMRLVCWSIVMLSRT 304
           PP + PSGP +K+  D+ RD     W++++ S T
Sbjct: 644 PPSSRPSGPAVKAYCDMTRDGG--GWTLLVTSHT 675


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,766,906
Number of Sequences: 59808
Number of extensions: 351088
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1172759136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)