Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical pr...    27   6.2  
U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protei...    27   6.2  
U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protei...    27   6.2  
U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protei...    27   6.2  
U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protei...    27   6.2  
U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protei...    27   6.2  
U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protei...    27   6.2  
Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z69787-1|CAA93642.1|  300|Caenorhabditis elegans Hypothetical
           protein C44C10.1 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 136 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 169


>U53344-2|AAP13769.1|  301|Caenorhabditis elegans Collagen protein
           166, isoform b protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 137 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 170


>U53344-1|AAA96223.1|  363|Caenorhabditis elegans Collagen protein
           166, isoform a protein.
          Length = 363

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 199 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 232


>U39644-6|AAO44907.1|  300|Caenorhabditis elegans Collagen protein
           170 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 136 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 169


>U39644-5|AAO44906.1|  300|Caenorhabditis elegans Collagen protein
           169 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 136 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 169


>U39644-4|AAA80357.2|  301|Caenorhabditis elegans Collagen protein
           168 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 137 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 170


>U39644-3|AAA80358.2|  301|Caenorhabditis elegans Collagen protein
           167 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -3

Query: 480 NDCCSGGHWYAAP*GTYCWEALEGPPPEADPSGP 379
           ND   G     AP   +C++   GPP  A P+GP
Sbjct: 137 NDGPDGPAATPAPAHEFCFDCPAGPPGPAGPAGP 170


>Z50857-2|CAA90718.1|  219|Caenorhabditis elegans Hypothetical
           protein F11A1.2 protein.
          Length = 219

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -2

Query: 172 VGTEIQHILSYNNCVKIIALRANISHY 92
           VGT I H+LS +N V+   LRA I+ Y
Sbjct: 167 VGTAISHLLSLSNLVQ-FTLRAAITKY 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,222,952
Number of Sequences: 27780
Number of extensions: 252540
Number of successful extensions: 731
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)