Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   2.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.4  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.8  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   5.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.7  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   7.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   7.7  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.7  

>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +2

Query: 113 KRYYFHTIVIGQNVLDFRA 169
           K+YY H    GQ  L++R+
Sbjct: 180 KQYYLHQFATGQPDLNYRS 198


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 202 LASCTCSSTKVGTEIQHILSYNN 134
           L +  C+ST    + +H+L++N+
Sbjct: 629 LNNSMCTSTTTSPDKEHVLAHND 651


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 450 AAP*GTYCWEALEGPPPEADPSGPGLKSNGDIL 352
           A P   Y W A  G  P    SGP  +  G +L
Sbjct: 263 ACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVL 295


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -3

Query: 450 AAP*GTYCWEALEGPPPEADPSGPGLKSNGDIL 352
           A P   Y W A  G  P    SGP  +  G +L
Sbjct: 263 ACPTPEYRWYAQTGSEPMLVLSGPRTRLLGSVL 295


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -1

Query: 452 MLRLEAHIVGKHWKVHHPKPILLDQDL 372
           + RLE H+  K W     +P +  Q L
Sbjct: 236 LARLERHLERKAWVASFGRPKMTPQSL 262


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +2

Query: 455 QCPPEQQSFGYANLDASY 508
           +CP +  SFGY   D  Y
Sbjct: 143 RCPLQFGSFGYTKRDVIY 160


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 480 LDMPIWMLHIY 512
           +D P+W  HIY
Sbjct: 631 IDSPVWGRHIY 641


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 127 KIIALRANISHYWNYNDLSHK 65
           KII+  +N  +Y NYN+ ++K
Sbjct: 80  KIISSLSNNYNYSNYNNNNYK 100


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 480 LDMPIWMLHIY 512
           +D P+W  HIY
Sbjct: 631 IDSPVWGRHIY 641


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,490
Number of Sequences: 438
Number of extensions: 3108
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)