Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F11f
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g02660.1 68415.m00205 hypothetical protein                          29   1.9  
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica...    29   2.5  

>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -3

Query: 519 VGNRYEASRLAYPNDCCSGGH-WYAAP*GTYCWEALEGPPPEADPSGPGLKSNG 361
           +G +Y+A  +AYP+D   G H       G   W  ++ P P     G G+  NG
Sbjct: 154 IGKQYKALSIAYPSD--PGRHKILTLGDGDLTWRKIKCPVPRPGIKGDGICING 205


>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
           to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
           GI:21427461; contains Pfam profile PF00022: Actin
          Length = 427

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +3

Query: 381 VQKDRLRVVDLPVLPNNMCLKAQHTNAPLNNNHLDMPIWMLHIYF 515
           +Q+D  ++VD  VL NN     + T+ P+  N +  P+    ++F
Sbjct: 344 LQRDLKKIVDARVLANNARTGGEITSQPVEVNVVSHPVQRFAVWF 388


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,394,242
Number of Sequences: 28952
Number of extensions: 228758
Number of successful extensions: 515
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 515
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)