Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F10f
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|...    27   1.1  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.5  
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.6  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   6.1  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   8.1  
SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces po...    25   8.1  

>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/60 (23%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +2

Query: 68  KEN*KVTIVYLPFTTM---NMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYET 238
           +EN +  I+Y P +T    N ++ E  +L+  + A+  R ++ +  ++AL + L ++ ++
Sbjct: 49  QENERYPILYTPLSTSDHDNDEENEINELKNAVKALDKRFDNFELKLEALFSLLRSQQDS 108


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +2

Query: 272 ILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGR-VPACTHDL 433
           ILSG ++ L K+   E AAS+ S+ V+      E +E  A L +   VP+ ++ L
Sbjct: 92  ILSGRISELLKVSPFELAASVTSQDVVEADSLVEENELQAWLEKQELVPSSSNFL 146


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 179 NDLKTAIQALINKLETEYETINWP-TFLDNYAILSGHLTGLSKILQAEQAASL 334
           +D++    +   + E E    ++P TF+   A  S H T  +K++ A+++A L
Sbjct: 79  DDIENEASSFSEQSENENYDFSYPGTFVYRKAASSSHETLATKVVSADESARL 131


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
 Frame = +2

Query: 107 TTMNMQQREE-KQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNY 268
           T    Q  EE KQ  A +V + N+VN+ +   +     +E E   I+W  +   Y
Sbjct: 375 TPSGYQYEEELKQGMACVVRVANQVNETRRIHENRNAIIELEQRVIDWKGYSLQY 429


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +2

Query: 293  GLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGRV 412
            G+ +I +   AA   S  ++  QL  +RDE  A + +GR+
Sbjct: 1079 GVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRI 1118


>SPAC3C7.05c |mug191||alpha-1,6-mannanase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 16/31 (51%), Positives = 18/31 (58%)
 Frame = -2

Query: 338 TAMKLLVRLGEFY*GQSGDQIKSRNYLEKLA 246
           TAM LL+ LGEF  G   D  K   YLE +A
Sbjct: 243 TAMSLLMGLGEFTKGLQ-DIEKLPTYLEDMA 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,761,159
Number of Sequences: 5004
Number of extensions: 30658
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)