Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F10f
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    29   2.6  
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504...    28   4.6  
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726...    27   8.1  

>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 134 EKQLEATIVAILNRVNDLKTAIQALINKLETEYETINW 247
           +K+L    V +L R+ + K A+  +INKLE   E + +
Sbjct: 704 QKELVREQVFVLGRMGNAKEALSTIINKLEDIQEAVEF 741


>06_01_0692 -
           5047162-5047441,5047602-5047726,5048257-5048327,
           5048453-5048834,5049389-5050126
          Length = 531

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/32 (50%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
 Frame = -1

Query: 405 PSVK*ASVS--SRSQLN*SGKTILDRNEAACS 316
           PS + ++VS  S++ L  SGKTILDR+E++ S
Sbjct: 38  PSFESSAVSDVSKADLRASGKTILDRSESSKS 69


>04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,
            7265088-7265393,7265652-7265866,7266195-7266489,
            7266596-7266655,7267091-7267717,7268510-7268596,
            7269292-7269612,7270051-7270224,7272806-7275022
          Length = 1594

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +2

Query: 143  LEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLD 262
            LE  +VA+  RVN   T     + K+E    + NWPT  D
Sbjct: 1287 LENDMVAV-ERVNQFSTLPSEAVWKIEDHLPSPNWPTHGD 1325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,677,490
Number of Sequences: 37544
Number of extensions: 173820
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)