Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F10f
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)            83   2e-16
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)         29   2.1  
SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)                     29   2.7  
SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)                  28   4.7  
SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)                    27   8.3  

>SB_39673| Best HMM Match : TRAP-delta (HMM E-Value=1.2e-32)
          Length = 504

 Score = 82.6 bits (195), Expect = 2e-16
 Identities = 34/77 (44%), Positives = 59/77 (76%)
 Frame = +2

Query: 248 PTFLDNYAILSGHLTGLSKILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTH 427
           P+ LDN+A+LSG ++ L+K+L+ ++  +LR+ ++LP+ +  E+DE L  +++GR+PA  H
Sbjct: 44  PSVLDNFALLSGQVSTLTKLLKGDKTPALRNLVLLPVLVQQEQDEELVKISQGRIPAFNH 103

Query: 428 DLVPDLLRTKPEPQAEQ 478
           ++VPD LRTK EP+ E+
Sbjct: 104 EVVPDHLRTKYEPEVEE 120


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
 Frame = +2

Query: 104  FTTMNMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILSG 283
            FTT+++  +E++  E+T+ A+L+++NDL    +    KL  E    + P+F       SG
Sbjct: 3843 FTTVSLLVKEQR--ESTVTALLSKINDLYLPTKEGYLKLSNELIFYDCPSFERRARDFSG 3900

Query: 284  HLTGLSK--ILQAEQAASLRSRIVLPLQL 364
                +++   L A++ A L +  +LP +L
Sbjct: 3901 DFMDIAREGELTADRLAYLLN--LLPTRL 3927


>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2916

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 131 EEKQLEATIVAILNRVNDLKTAIQALINK 217
           E+  LE+TIV + ++V DLK  I+AL  K
Sbjct: 547 EKAVLESTIVGLQSKVQDLKNEIRALKGK 575


>SB_17728| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.0032)
          Length = 1293

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = +2

Query: 131 EEKQLEATIVAILNRVNDLKTAIQALINK 217
           E+  LE+TIV + ++V DLK  I+AL  K
Sbjct: 495 EKAVLESTIVGLQSKVQDLKNEIRALKGK 523


>SB_37867| Best HMM Match : PH (HMM E-Value=0.0027)
          Length = 369

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +3

Query: 294 ASVKFSKPNKQLHCG 338
           +SVK   PNKQLHCG
Sbjct: 200 SSVKSEAPNKQLHCG 214


>SB_36880| Best HMM Match : DUF1337 (HMM E-Value=0.54)
          Length = 367

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 236 TIN-WPTFLDN-YAILSGHLTGL 298
           TIN WPTFLDN +A ++  + GL
Sbjct: 48  TINRWPTFLDNSFAFIAAEVNGL 70


>SB_21597| Best HMM Match : ig (HMM E-Value=2.9e-14)
          Length = 1931

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +2

Query: 143  LEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHLTGL 298
            +E  +V++ +  N L+TA+ AL+N   T+   +      D + +L G  T +
Sbjct: 1677 VEQNVVSVEDAANQLRTAVIALVN--VTQSRQLGVTVGHDRFTLLQGSTTAV 1726


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,780,163
Number of Sequences: 59808
Number of extensions: 218711
Number of successful extensions: 486
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 477
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)