Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ovS307F10f
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymer...   133   4e-31
BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.         45   2e-04
BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymer...    45   2e-04
AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymer...    45   2e-04
AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymer...    45   2e-04
D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein.               29   6.5  
BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence si...    29   6.5  
AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein.                  29   6.5  

>AF521562-1|AAM76709.1|  268|Homo sapiens mediator of RNA polymerase
           II transcription subunit MED8 protein.
          Length = 268

 Score =  133 bits (321), Expect = 4e-31
 Identities = 60/119 (50%), Positives = 90/119 (75%)
 Frame = +2

Query: 125 QREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHLTGLSK 304
           QREEKQLEA++ A+L++V DLK ++ + I KLE EY  + WP+ LD++A+LSG L  L+K
Sbjct: 2   QREEKQLEASLDALLSQVADLKNSLGSFICKLENEYGRLTWPSVLDSFALLSGQLNTLNK 61

Query: 305 ILQAEQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLVPDLLRTKPEPQAEQR 481
           +L+ E+    R+++++PL LS +RDE L   TEGRVP  +H++VPD LRTKP+P+ E++
Sbjct: 62  VLKHEKTPLFRNQVIIPLVLSPDRDEDLMRQTEGRVPVFSHEVVPDHLRTKPDPEVEEQ 120


>BC010543-1|AAH10543.1|  212|Homo sapiens MED8 protein protein.
          Length = 212

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 398 TEGRVPACTHDLVPDLLRTKPEPQAEQR 481
           TEGRVP  +H++VPD LRTKP+P+ E++
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQ 31


>BC010019-1|AAH10019.3|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 398 TEGRVPACTHDLVPDLLRTKPEPQAEQR 481
           TEGRVP  +H++VPD LRTKP+P+ E++
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQ 31


>AL139289-6|CAI23382.1|  179|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 179

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 398 TEGRVPACTHDLVPDLLRTKPEPQAEQR 481
           TEGRVP  +H++VPD LRTKP+P+ E++
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQ 31


>AL139289-5|CAI23381.1|  212|Homo sapiens mediator of RNA polymerase
           II transcription, subunit 8 homolog (S. cerevisiae)
           protein.
          Length = 212

 Score = 44.8 bits (101), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 24/28 (85%)
 Frame = +2

Query: 398 TEGRVPACTHDLVPDLLRTKPEPQAEQR 481
           TEGRVP  +H++VPD LRTKP+P+ E++
Sbjct: 4   TEGRVPVFSHEVVPDHLRTKPDPEVEEQ 31


>D87071-1|BAA13240.1| 2035|Homo sapiens KIAA0233 protein.
          Length = 2035

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 286 VTR*NRVII*KSWPIYCLVFRF*FIYQCLYC 194
           +TR +R  I + WP YCL      +YQ L C
Sbjct: 540 LTRRHRQAIARLWPNYCLFLALFLLYQYLLC 570


>BC150271-1|AAI50272.1| 2035|Homo sapiens family with sequence
           similarity 38, member A protein.
          Length = 2035

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 286 VTR*NRVII*KSWPIYCLVFRF*FIYQCLYC 194
           +TR +R  I + WP YCL      +YQ L C
Sbjct: 540 LTRRHRQAIARLWPNYCLFLALFLLYQYLLC 570


>AB161230-1|BAF03565.1| 2090|Homo sapiens Mib protein.
          Length = 2090

 Score = 29.5 bits (63), Expect = 6.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -3

Query: 286 VTR*NRVII*KSWPIYCLVFRF*FIYQCLYC 194
           +TR +R  I + WP YCL      +YQ L C
Sbjct: 595 LTRRHRQAIARLWPNYCLFLALFLLYQYLLC 625


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,941,725
Number of Sequences: 237096
Number of extensions: 1009401
Number of successful extensions: 1861
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)