Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ovS307F10f
(489 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110499-2|CAB57913.1| 297|Caenorhabditis elegans Hypothetical ... 74 6e-14
AL110499-1|CAB57912.1| 325|Caenorhabditis elegans Hypothetical ... 74 6e-14
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 33 0.11
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 33 0.11
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 33 0.11
Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical pr... 30 1.0
Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical pr... 27 7.3
U50311-7|AAA92311.1| 401|Caenorhabditis elegans Hypothetical pr... 27 7.3
Z71186-3|CAA94914.1| 222|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AL110499-2|CAB57913.1| 297|Caenorhabditis elegans Hypothetical
protein Y62F5A.1b protein.
Length = 297
Score = 73.7 bits (173), Expect = 6e-14
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Frame = +2
Query: 101 PFTTMNMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILS 280
P T N Q EK +AT + I RV D K I+ L+ L+ + E WP L+ ++ L+
Sbjct: 8 PPVTSNYQGEPEKIAQATDMMI-KRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLA 65
Query: 281 GHLTGLSKILQA--------EQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLV 436
++ L ++ + LRS +++ +L E DETL T+GRV + H LV
Sbjct: 66 SFMSSLQSSVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALV 125
Query: 437 PDLLRTKPEPQAE 475
P+ LRTKP P+ E
Sbjct: 126 PEYLRTKPNPEME 138
>AL110499-1|CAB57912.1| 325|Caenorhabditis elegans Hypothetical
protein Y62F5A.1a protein.
Length = 325
Score = 73.7 bits (173), Expect = 6e-14
Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Frame = +2
Query: 101 PFTTMNMQQREEKQLEATIVAILNRVNDLKTAIQALINKLETEYETINWPTFLDNYAILS 280
P T N Q EK +AT + I RV D K I+ L+ L+ + E WP L+ ++ L+
Sbjct: 8 PPVTSNYQGEPEKIAQATDMMI-KRVTDAKKIIEELLQMLDLQ-EKCPWPLMLEKFSTLA 65
Query: 281 GHLTGLSKILQA--------EQAASLRSRIVLPLQLSCERDETLAHLTEGRVPACTHDLV 436
++ L ++ + LRS +++ +L E DETL T+GRV + H LV
Sbjct: 66 SFMSSLQSSVRKSGMPHGHEDYGQFLRSHVLVTQRLQYEPDETLQRATQGRVMSWNHALV 125
Query: 437 PDLLRTKPEPQAE 475
P+ LRTKP P+ E
Sbjct: 126 PEYLRTKPNPEME 138
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 173 RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 289
+++DL+ I+++ +++T E I W F YA+L+ H+
Sbjct: 1976 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2014
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 173 RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 289
+++DL+ I+++ +++T E I W F YA+L+ H+
Sbjct: 1993 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2031
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 33.1 bits (72), Expect = 0.11
Identities = 12/39 (30%), Positives = 25/39 (64%)
Frame = +2
Query: 173 RVNDLKTAIQALINKLETEYETINWPTFLDNYAILSGHL 289
+++DL+ I+++ +++T E I W F YA+L+ H+
Sbjct: 1976 QISDLRQNIKSMNREIQTALEHIGWRAFYPAYAVLARHI 2014
>Z93375-4|CAB07562.2| 647|Caenorhabditis elegans Hypothetical
protein C38C6.2 protein.
Length = 647
Score = 29.9 bits (64), Expect = 1.0
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 371 ERDETLAHLTEGRVPACTHDLVPDLL 448
E+D + H EG V C H+++ D+L
Sbjct: 395 EKDTKICHKNEGSVATCVHEILSDVL 420
>Z66500-4|CAA91305.2| 630|Caenorhabditis elegans Hypothetical
protein T05C12.4 protein.
Length = 630
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 264 LSRKVGQFIVSYSVSSLFINACIAVFKSFTLF 169
+S K+G+ + + L ++ C+ VF FTLF
Sbjct: 473 VSNKIGKVVSVNAAILLLMSPCMLVFSCFTLF 504
>U50311-7|AAA92311.1| 401|Caenorhabditis elegans Hypothetical
protein C25E10.1 protein.
Length = 401
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 323 AASLRSRIVLPLQLSCERDETLAHLTEGRVPACTH 427
AA R +VL L+ C +DE +L + R +C H
Sbjct: 27 AAFFRRFVVLNLEYECLKDEIKCNLNKIRRSSCRH 61
>Z71186-3|CAA94914.1| 222|Caenorhabditis elegans Hypothetical
protein F23D12.4 protein.
Length = 222
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 104 FTTMNMQQREEKQLEATIVAILNRVNDLKTAIQAL 208
F ++M+ +KQ +A I+ I+N VN LK + L
Sbjct: 146 FKMISMELTFDKQPDAVILDIINLVNHLKIKMDTL 180
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,761
Number of Sequences: 27780
Number of extensions: 167133
Number of successful extensions: 433
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 433
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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